Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LRRC53A6NM62 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.85■□□□□ 0.93
LRRC53A6NM62 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 AC060766.5-201ENST00000590539 871 ntBASIC20.84■□□□□ 0.93
LRRC53A6NM62 AC083880.1-201ENST00000608266 535 ntBASIC20.84■□□□□ 0.93
LRRC53A6NM62 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.84■□□□□ 0.93
LRRC53A6NM62 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LRRC53A6NM62 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC53A6NM62 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC53A6NM62 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC53A6NM62 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC53A6NM62 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC53A6NM62 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LRRC53A6NM62 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 AL138781.1-201ENST00000566567 1274 ntBASIC20.83■□□□□ 0.93
LRRC53A6NM62 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
LRRC53A6NM62 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC53A6NM62 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.83■□□□□ 0.92
LRRC53A6NM62 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC53A6NM62 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRC53A6NM62 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRC53A6NM62 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.83■□□□□ 0.92
LRRC53A6NM62 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LRRC53A6NM62 FP475955.4-201ENST00000623131 1990 ntBASIC20.83■□□□□ 0.92
LRRC53A6NM62 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.82■□□□□ 0.92
LRRC53A6NM62 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LRRC53A6NM62 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.82■□□□□ 0.92
LRRC53A6NM62 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms