Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LSM3P62310 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.47■□□□□ 0.39
LSM3P62310 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.47■□□□□ 0.39
LSM3P62310 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.47■□□□□ 0.39
LSM3P62310 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.47■□□□□ 0.39
LSM3P62310 KRT16P2-201ENST00000414673 1423 ntBASIC17.47■□□□□ 0.39
LSM3P62310 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LSM3P62310 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LSM3P62310 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
LSM3P62310 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.46■□□□□ 0.39
LSM3P62310 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LSM3P62310 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LSM3P62310 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.46■□□□□ 0.39
LSM3P62310 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LSM3P62310 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LSM3P62310 AC126544.1-201ENST00000580842 1059 ntBASIC17.46■□□□□ 0.39
LSM3P62310 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LSM3P62310 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LSM3P62310 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.46■□□□□ 0.39
LSM3P62310 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LSM3P62310 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 IGHV3-19-201ENST00000521488 291 ntBASIC17.45■□□□□ 0.38
LSM3P62310 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.45■□□□□ 0.38
LSM3P62310 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC17.45■□□□□ 0.38
LSM3P62310 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LSM3P62310 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LSM3P62310 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
LSM3P62310 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
LSM3P62310 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.44■□□□□ 0.38
LSM3P62310 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.44■□□□□ 0.38
LSM3P62310 BX842568.3-201ENST00000418104 571 ntBASIC17.44■□□□□ 0.38
LSM3P62310 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC17.44■□□□□ 0.38
LSM3P62310 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
LSM3P62310 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LSM3P62310 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LSM3P62310 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
LSM3P62310 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
LSM3P62310 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
LSM3P62310 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LSM3P62310 TEX21P-204ENST00000641479 1693 ntBASIC17.43■□□□□ 0.38
LSM3P62310 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms