Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC22.42■■□□□ 1.18
HMGCS2P54868 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
HMGCS2P54868 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC22.42■■□□□ 1.18
HMGCS2P54868 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC22.42■■□□□ 1.18
HMGCS2P54868 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC22.42■■□□□ 1.18
HMGCS2P54868 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC22.42■■□□□ 1.18
HMGCS2P54868 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
HMGCS2P54868 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
HMGCS2P54868 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC22.42■■□□□ 1.18
HMGCS2P54868 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 KRT8P11-201ENST00000409686 1436 ntBASIC22.41■■□□□ 1.18
HMGCS2P54868 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGCS2P54868 IER3-202ENST00000376377 1350 ntBASIC22.41■■□□□ 1.18
HMGCS2P54868 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC22.41■■□□□ 1.18
HMGCS2P54868 KRT18P38-201ENST00000449496 1282 ntBASIC22.41■■□□□ 1.18
HMGCS2P54868 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC22.41■■□□□ 1.18
HMGCS2P54868 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC22.41■■□□□ 1.18
HMGCS2P54868 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC22.41■■□□□ 1.18
HMGCS2P54868 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.41■■□□□ 1.18
HMGCS2P54868 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
HMGCS2P54868 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
HMGCS2P54868 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC22.4■■□□□ 1.18
HMGCS2P54868 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 Telomerase-vert.1-201ENST00000363312 438 ntBASIC22.4■■□□□ 1.18
HMGCS2P54868 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
HMGCS2P54868 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC22.4■■□□□ 1.18
HMGCS2P54868 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC22.4■■□□□ 1.18
HMGCS2P54868 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC22.4■■□□□ 1.18
HMGCS2P54868 AC008622.2-201ENST00000617006 1229 ntBASIC22.4■■□□□ 1.18
HMGCS2P54868 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.18
HMGCS2P54868 AC009237.14-201ENST00000609975 1594 ntBASIC22.4■■□□□ 1.18
HMGCS2P54868 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
HMGCS2P54868 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
HMGCS2P54868 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
HMGCS2P54868 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC22.39■■□□□ 1.18
HMGCS2P54868 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
HMGCS2P54868 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC22.39■■□□□ 1.18
HMGCS2P54868 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGCS2P54868 PRSS44-201ENST00000515154 1146 ntBASIC22.39■■□□□ 1.17
HMGCS2P54868 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC22.39■■□□□ 1.17
HMGCS2P54868 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC22.39■■□□□ 1.17
HMGCS2P54868 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGCS2P54868 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGCS2P54868 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
HMGCS2P54868 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
HMGCS2P54868 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGCS2P54868 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
HMGCS2P54868 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
HMGCS2P54868 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.38■■□□□ 1.17
HMGCS2P54868 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
HMGCS2P54868 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
HMGCS2P54868 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGCS2P54868 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGCS2P54868 BET1L-202ENST00000332865 533 ntTSL 5 BASIC22.38■■□□□ 1.17
HMGCS2P54868 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
HMGCS2P54868 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC22.38■■□□□ 1.17
HMGCS2P54868 TOLLIP-AS1-201ENST00000530897 939 ntBASIC22.38■■□□□ 1.17
HMGCS2P54868 AC093458.2-201ENST00000623150 629 ntBASIC22.38■■□□□ 1.17
HMGCS2P54868 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC22.38■■□□□ 1.17
HMGCS2P54868 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC22.38■■□□□ 1.17
HMGCS2P54868 AC005332.1-201ENST00000577698 1310 ntBASIC22.37■■□□□ 1.17
HMGCS2P54868 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
HMGCS2P54868 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC22.37■■□□□ 1.17
HMGCS2P54868 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
HMGCS2P54868 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
HMGCS2P54868 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms