Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL138781.2-201ENST00000617896 1843 ntBASIC17.05■□□□□ 0.32
SOX2P48431 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.05■□□□□ 0.32
SOX2P48431 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 AC016769.1-201ENST00000409132 1010 ntBASIC17.05■□□□□ 0.32
SOX2P48431 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SOX2P48431 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX2P48431 CYP2T1P-201ENST00000432607 1285 ntBASIC17.05■□□□□ 0.32
SOX2P48431 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX2P48431 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX2P48431 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.05■□□□□ 0.32
SOX2P48431 DUX4L16-201ENST00000555130 1264 ntBASIC17.05■□□□□ 0.32
SOX2P48431 C2orf69P4-201ENST00000565394 541 ntBASIC17.05■□□□□ 0.32
SOX2P48431 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX2P48431 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC17.05■□□□□ 0.32
SOX2P48431 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX2P48431 WWOX-218ENST00000627394 894 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX2P48431 AC008694.1-202ENST00000636953 945 ntBASIC17.05■□□□□ 0.32
SOX2P48431 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX2P48431 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX2P48431 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX2P48431 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SOX2P48431 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX2P48431 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX2P48431 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX2P48431 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SOX2P48431 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SOX2P48431 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX2P48431 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.04■□□□□ 0.32
SOX2P48431 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX2P48431 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC17.04■□□□□ 0.32
SOX2P48431 AC023632.3-201ENST00000521633 145 ntBASIC17.04■□□□□ 0.32
SOX2P48431 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SOX2P48431 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.04■□□□□ 0.32
SOX2P48431 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX2P48431 AL589743.5-201ENST00000616611 1050 ntBASIC17.04■□□□□ 0.32
SOX2P48431 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX2P48431 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.04■□□□□ 0.32
SOX2P48431 AC018553.1-201ENST00000616682 1458 ntBASIC17.04■□□□□ 0.32
SOX2P48431 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.04■□□□□ 0.32
SOX2P48431 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
SOX2P48431 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SOX2P48431 CROCCP3-202ENST00000420820 1947 ntBASIC17.04■□□□□ 0.32
SOX2P48431 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.04■□□□□ 0.32
SOX2P48431 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
SOX2P48431 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
SOX2P48431 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.03■□□□□ 0.32
SOX2P48431 GXYLT1P2-201ENST00000433312 1230 ntBASIC17.03■□□□□ 0.32
SOX2P48431 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.03■□□□□ 0.32
SOX2P48431 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.03■□□□□ 0.32
SOX2P48431 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC17.03■□□□□ 0.32
SOX2P48431 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX2P48431 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SOX2P48431 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
SOX2P48431 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.03■□□□□ 0.32
SOX2P48431 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SOX2P48431 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SOX2P48431 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX2P48431 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SOX2P48431 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX2P48431 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.02■□□□□ 0.32
SOX2P48431 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
SOX2P48431 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
SOX2P48431 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SOX2P48431 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms