Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 HTR7P1-201ENST00000538670 1336 ntBASIC18.99■□□□□ 0.63
SHMT2P34897 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.99■□□□□ 0.63
SHMT2P34897 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.98■□□□□ 0.63
SHMT2P34897 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SHMT2P34897 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SHMT2P34897 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.98■□□□□ 0.63
SHMT2P34897 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 AC125437.2-201ENST00000625180 2167 ntBASIC18.98■□□□□ 0.63
SHMT2P34897 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.98■□□□□ 0.63
SHMT2P34897 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SHMT2P34897 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SHMT2P34897 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 AP001412.1-201ENST00000608405 714 ntBASIC18.98■□□□□ 0.63
SHMT2P34897 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.98■□□□□ 0.63
SHMT2P34897 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SHMT2P34897 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
SHMT2P34897 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHMT2P34897 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 AP000974.1-201ENST00000623909 2387 ntBASIC18.97■□□□□ 0.63
SHMT2P34897 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
SHMT2P34897 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 RPS2P55-201ENST00000397318 883 ntBASIC18.97■□□□□ 0.63
SHMT2P34897 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.97■□□□□ 0.63
SHMT2P34897 RPS2P4-201ENST00000476944 856 ntBASIC18.97■□□□□ 0.63
SHMT2P34897 AC107956.1-201ENST00000494359 873 ntBASIC18.97■□□□□ 0.63
SHMT2P34897 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.97■□□□□ 0.63
SHMT2P34897 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.97■□□□□ 0.63
SHMT2P34897 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHMT2P34897 AL158211.5-201ENST00000623583 2518 ntBASIC18.97■□□□□ 0.63
SHMT2P34897 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SHMT2P34897 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SHMT2P34897 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.96■□□□□ 0.63
SHMT2P34897 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.96■□□□□ 0.63
SHMT2P34897 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.96■□□□□ 0.63
SHMT2P34897 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.96■□□□□ 0.63
SHMT2P34897 C1QL1P1-201ENST00000568105 661 ntBASIC18.96■□□□□ 0.63
SHMT2P34897 AC233702.5-201ENST00000584107 538 ntBASIC18.96■□□□□ 0.63
SHMT2P34897 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.96■□□□□ 0.63
SHMT2P34897 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.96■□□□□ 0.63
SHMT2P34897 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.96■□□□□ 0.63
SHMT2P34897 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.96■□□□□ 0.63
SHMT2P34897 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHMT2P34897 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SHMT2P34897 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SHMT2P34897 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.95■□□□□ 0.62
SHMT2P34897 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SHMT2P34897 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.95■□□□□ 0.62
SHMT2P34897 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.95■□□□□ 0.62
SHMT2P34897 AP002982.1-201ENST00000492365 877 ntBASIC18.95■□□□□ 0.62
SHMT2P34897 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SHMT2P34897 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.95■□□□□ 0.62
SHMT2P34897 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHMT2P34897 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.95■□□□□ 0.62
SHMT2P34897 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms