Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC24.49■■□□□ 1.51
CACNA1FO60840 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC24.49■■□□□ 1.51
CACNA1FO60840 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC24.49■■□□□ 1.51
CACNA1FO60840 AP000525.1-201ENST00000608286 694 ntBASIC24.49■■□□□ 1.51
CACNA1FO60840 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC24.49■■□□□ 1.51
CACNA1FO60840 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC24.49■■□□□ 1.51
CACNA1FO60840 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC24.49■■□□□ 1.51
CACNA1FO60840 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1FO60840 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC24.49■■□□□ 1.51
CACNA1FO60840 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1FO60840 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1FO60840 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1FO60840 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
CACNA1FO60840 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1FO60840 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC24.49■■□□□ 1.51
CACNA1FO60840 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
CACNA1FO60840 PRR31-201ENST00000371629 978 ntTSL 2 BASIC24.49■■□□□ 1.51
CACNA1FO60840 TSPY21P-201ENST00000433481 731 ntBASIC24.49■■□□□ 1.51
CACNA1FO60840 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.48■■□□□ 1.51
CACNA1FO60840 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC24.48■■□□□ 1.51
CACNA1FO60840 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC24.48■■□□□ 1.51
CACNA1FO60840 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC24.48■■□□□ 1.51
CACNA1FO60840 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC24.48■■□□□ 1.51
CACNA1FO60840 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
CACNA1FO60840 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
CACNA1FO60840 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 SDHAP1-207ENST00000440850 2000 ntBASIC24.48■■□□□ 1.51
CACNA1FO60840 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC24.48■■□□□ 1.51
CACNA1FO60840 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
CACNA1FO60840 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC24.48■■□□□ 1.51
CACNA1FO60840 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1FO60840 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC24.47■■□□□ 1.51
CACNA1FO60840 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1FO60840 GXYLT1P6-201ENST00000456472 1187 ntBASIC24.47■■□□□ 1.51
CACNA1FO60840 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1FO60840 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
CACNA1FO60840 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1FO60840 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1FO60840 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC24.47■■□□□ 1.51
CACNA1FO60840 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC24.47■■□□□ 1.51
CACNA1FO60840 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC24.47■■□□□ 1.51
CACNA1FO60840 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC24.47■■□□□ 1.51
CACNA1FO60840 GRAMD4P8-201ENST00000605465 1115 ntBASIC24.47■■□□□ 1.51
CACNA1FO60840 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1FO60840 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
CACNA1FO60840 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
CACNA1FO60840 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CACNA1FO60840 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC24.46■■□□□ 1.51
CACNA1FO60840 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
CACNA1FO60840 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
CACNA1FO60840 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC24.46■■□□□ 1.51
CACNA1FO60840 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
CACNA1FO60840 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC24.46■■□□□ 1.51
CACNA1FO60840 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC24.46■■□□□ 1.51
CACNA1FO60840 CYP2D8P-201ENST00000433633 1490 ntBASIC24.46■■□□□ 1.51
CACNA1FO60840 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
CACNA1FO60840 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC24.46■■□□□ 1.51
CACNA1FO60840 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC24.46■■□□□ 1.51
CACNA1FO60840 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC24.46■■□□□ 1.51
CACNA1FO60840 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC24.46■■□□□ 1.51
CACNA1FO60840 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CACNA1FO60840 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CACNA1FO60840 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC24.45■■□□□ 1.51
CACNA1FO60840 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC24.45■■□□□ 1.51
CACNA1FO60840 P4HB-223ENST00000576390 439 ntTSL 4 BASIC24.45■■□□□ 1.51
CACNA1FO60840 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC24.45■■□□□ 1.51
CACNA1FO60840 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CACNA1FO60840 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CACNA1FO60840 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
CACNA1FO60840 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
CACNA1FO60840 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC24.45■■□□□ 1.51
CACNA1FO60840 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CACNA1FO60840 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CACNA1FO60840 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
CACNA1FO60840 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC24.45■■□□□ 1.5
CACNA1FO60840 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
CACNA1FO60840 AC010947.1-201ENST00000623454 693 ntBASIC24.45■■□□□ 1.5
CACNA1FO60840 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CACNA1FO60840 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
CACNA1FO60840 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
CACNA1FO60840 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC24.44■■□□□ 1.5
CACNA1FO60840 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CACNA1FO60840 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
CACNA1FO60840 CYGB-204ENST00000589342 815 ntTSL 3 BASIC24.44■■□□□ 1.5
CACNA1FO60840 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC24.44■■□□□ 1.5
CACNA1FO60840 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
CACNA1FO60840 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
CACNA1FO60840 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC24.44■■□□□ 1.5
CACNA1FO60840 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CACNA1FO60840 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
CACNA1FO60840 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms