Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.87■□□□□ 0.61
HDAC3O15379 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
HDAC3O15379 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.87■□□□□ 0.61
HDAC3O15379 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.87■□□□□ 0.61
HDAC3O15379 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.87■□□□□ 0.61
HDAC3O15379 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.87■□□□□ 0.61
HDAC3O15379 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.87■□□□□ 0.61
HDAC3O15379 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 AC093525.10-201ENST00000625130 1569 ntBASIC18.87■□□□□ 0.61
HDAC3O15379 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
HDAC3O15379 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDAC3O15379 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.86■□□□□ 0.61
HDAC3O15379 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
HDAC3O15379 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
HDAC3O15379 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.86■□□□□ 0.61
HDAC3O15379 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 OR10C1-204ENST00000622521 1039 ntBASIC18.86■□□□□ 0.61
HDAC3O15379 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HDAC3O15379 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 Z98044.1-201ENST00000632503 1764 ntBASIC18.86■□□□□ 0.61
HDAC3O15379 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDAC3O15379 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.85■□□□□ 0.61
HDAC3O15379 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.85■□□□□ 0.61
HDAC3O15379 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 KRT17P1-201ENST00000399211 1546 ntBASIC18.85■□□□□ 0.61
HDAC3O15379 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.85■□□□□ 0.61
HDAC3O15379 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 LETM1P2-201ENST00000597330 2178 ntBASIC18.85■□□□□ 0.61
HDAC3O15379 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HDAC3O15379 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.85■□□□□ 0.61
HDAC3O15379 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HDAC3O15379 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.85■□□□□ 0.61
HDAC3O15379 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.85■□□□□ 0.61
HDAC3O15379 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.85■□□□□ 0.61
HDAC3O15379 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.85■□□□□ 0.61
HDAC3O15379 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.85■□□□□ 0.61
HDAC3O15379 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.85■□□□□ 0.61
HDAC3O15379 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.85■□□□□ 0.61
HDAC3O15379 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.85■□□□□ 0.61
HDAC3O15379 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 WIZP1-201ENST00000531444 2299 ntBASIC18.85■□□□□ 0.61
HDAC3O15379 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
HDAC3O15379 AC135050.7-201ENST00000624508 2218 ntBASIC18.85■□□□□ 0.61
HDAC3O15379 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDAC3O15379 AC090164.3-201ENST00000610780 2143 ntBASIC18.85■□□□□ 0.61
HDAC3O15379 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.84■□□□□ 0.61
HDAC3O15379 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDAC3O15379 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms