Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 CDCA4P2-201ENST00000441182 718 ntBASIC16.91■□□□□ 0.3
NKX3-1Q99801 AC026185.1-201ENST00000445748 174 ntBASIC16.91■□□□□ 0.3
NKX3-1Q99801 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 GXYLT1P5-201ENST00000614548 1189 ntBASIC16.91■□□□□ 0.3
NKX3-1Q99801 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 AC100791.3-201ENST00000617619 330 ntBASIC16.91■□□□□ 0.3
NKX3-1Q99801 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NKX3-1Q99801 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NKX3-1Q99801 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 TK2-208ENST00000545043 1120 ntTSL 2 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
NKX3-1Q99801 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NKX3-1Q99801 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
NKX3-1Q99801 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
NKX3-1Q99801 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
NKX3-1Q99801 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.89■□□□□ 0.3
NKX3-1Q99801 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms