Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.24■□□□□ 0.51
RFX3P48380 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.23■□□□□ 0.51
RFX3P48380 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
RFX3P48380 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.23■□□□□ 0.51
RFX3P48380 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.23■□□□□ 0.51
RFX3P48380 CD99P1-205ENST00000527459 561 ntBASIC18.23■□□□□ 0.51
RFX3P48380 AP003097.1-201ENST00000530657 1135 ntBASIC18.23■□□□□ 0.51
RFX3P48380 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.23■□□□□ 0.51
RFX3P48380 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.23■□□□□ 0.51
RFX3P48380 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.23■□□□□ 0.51
RFX3P48380 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.23■□□□□ 0.51
RFX3P48380 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RFX3P48380 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.23■□□□□ 0.51
RFX3P48380 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RFX3P48380 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RFX3P48380 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.23■□□□□ 0.51
RFX3P48380 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.23■□□□□ 0.51
RFX3P48380 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.23■□□□□ 0.51
RFX3P48380 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.23■□□□□ 0.51
RFX3P48380 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RFX3P48380 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
RFX3P48380 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.22■□□□□ 0.51
RFX3P48380 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX3P48380 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RFX3P48380 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX3P48380 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
RFX3P48380 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.22■□□□□ 0.51
RFX3P48380 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.22■□□□□ 0.51
RFX3P48380 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.22■□□□□ 0.51
RFX3P48380 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.22■□□□□ 0.51
RFX3P48380 AL121906.2-201ENST00000621597 723 ntBASIC18.22■□□□□ 0.51
RFX3P48380 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX3P48380 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX3P48380 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RFX3P48380 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
RFX3P48380 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.22■□□□□ 0.51
RFX3P48380 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.22■□□□□ 0.51
RFX3P48380 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
RFX3P48380 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.21■□□□□ 0.51
RFX3P48380 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
RFX3P48380 AL020996.1-203ENST00000536896 2307 ntBASIC18.21■□□□□ 0.51
RFX3P48380 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
RFX3P48380 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
RFX3P48380 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
RFX3P48380 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
RFX3P48380 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.2■□□□□ 0.5
RFX3P48380 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.2■□□□□ 0.5
RFX3P48380 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
RFX3P48380 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
RFX3P48380 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
RFX3P48380 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.2■□□□□ 0.5
RFX3P48380 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.2■□□□□ 0.5
RFX3P48380 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.2■□□□□ 0.5
RFX3P48380 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
RFX3P48380 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
RFX3P48380 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
RFX3P48380 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms