Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-DQA1P01909 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 AC093525.10-201ENST00000625130 1569 ntBASIC14.6□□□□□ -0.07
HLA-DQA1P01909 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 KRT8P36-201ENST00000489121 1440 ntBASIC14.6□□□□□ -0.07
HLA-DQA1P01909 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 AC136469.2-201ENST00000623944 1028 ntBASIC14.6□□□□□ -0.07
HLA-DQA1P01909 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 AC061975.6-201ENST00000579045 1553 ntBASIC14.6□□□□□ -0.07
HLA-DQA1P01909 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
HLA-DQA1P01909 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 MIR4767-201ENST00000582827 78 ntBASIC14.59□□□□□ -0.07
HLA-DQA1P01909 RALB-208ENST00000631312 311 ntTSL 5 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
HLA-DQA1P01909 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
HLA-DQA1P01909 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC14.58□□□□□ -0.07
HLA-DQA1P01909 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.58□□□□□ -0.07
HLA-DQA1P01909 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
HLA-DQA1P01909 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
HLA-DQA1P01909 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 AC116050.2-201ENST00000612102 1779 ntBASIC14.58□□□□□ -0.08
HLA-DQA1P01909 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 AC024257.2-201ENST00000549699 147 ntBASIC14.58□□□□□ -0.08
HLA-DQA1P01909 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
HLA-DQA1P01909 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
HLA-DQA1P01909 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms