Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SNX3O60493 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.15■□□□□ 0.66
SNX3O60493 CCDC92B-201ENST00000575506 885 ntBASIC19.15■□□□□ 0.66
SNX3O60493 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SNX3O60493 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
SNX3O60493 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SNX3O60493 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SNX3O60493 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.14■□□□□ 0.66
SNX3O60493 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
SNX3O60493 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
SNX3O60493 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
SNX3O60493 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SNX3O60493 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SNX3O60493 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.14■□□□□ 0.65
SNX3O60493 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SNX3O60493 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.14■□□□□ 0.65
SNX3O60493 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.14■□□□□ 0.65
SNX3O60493 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.14■□□□□ 0.65
SNX3O60493 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SNX3O60493 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SNX3O60493 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.14■□□□□ 0.65
SNX3O60493 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.14■□□□□ 0.65
SNX3O60493 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.14■□□□□ 0.65
SNX3O60493 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SNX3O60493 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SNX3O60493 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SNX3O60493 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SNX3O60493 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SNX3O60493 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.13■□□□□ 0.65
SNX3O60493 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.13■□□□□ 0.65
SNX3O60493 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.13■□□□□ 0.65
SNX3O60493 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.13■□□□□ 0.65
SNX3O60493 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.13■□□□□ 0.65
SNX3O60493 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
SNX3O60493 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.13■□□□□ 0.65
SNX3O60493 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.13■□□□□ 0.65
SNX3O60493 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
SNX3O60493 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SNX3O60493 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SNX3O60493 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SNX3O60493 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.12■□□□□ 0.65
SNX3O60493 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
SNX3O60493 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.12■□□□□ 0.65
SNX3O60493 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.12■□□□□ 0.65
SNX3O60493 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SNX3O60493 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.12■□□□□ 0.65
SNX3O60493 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.12■□□□□ 0.65
SNX3O60493 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 AC027682.1-201ENST00000562846 899 ntBASIC19.12■□□□□ 0.65
SNX3O60493 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.12■□□□□ 0.65
SNX3O60493 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SNX3O60493 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
SNX3O60493 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SNX3O60493 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
SNX3O60493 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SNX3O60493 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SNX3O60493 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SNX3O60493 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SNX3O60493 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.11■□□□□ 0.65
SNX3O60493 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SNX3O60493 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms