Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 AF186192.3-201ENST00000583427 947 ntBASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL4A3BPQ9Y5P4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL4A3BPQ9Y5P4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 AL353807.1-201ENST00000427475 662 ntBASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.77■■□□□ 1.08
COL4A3BPQ9Y5P4 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
COL4A3BPQ9Y5P4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL4A3BPQ9Y5P4 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 SAPCD2P4-201ENST00000424595 1171 ntBASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
COL4A3BPQ9Y5P4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A3BPQ9Y5P4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A3BPQ9Y5P4 TREX1-205ENST00000625293 1783 ntBASIC21.74■■□□□ 1.07
COL4A3BPQ9Y5P4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A3BPQ9Y5P4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A3BPQ9Y5P4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC21.74■■□□□ 1.07
COL4A3BPQ9Y5P4 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms