Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PDZRN3Q9UPQ7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 NAPSB-206ENST00000562112 1266 ntBASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 AP000525.1-201ENST00000608286 694 ntBASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDZRN3Q9UPQ7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 AC116562.2-201ENST00000507042 360 ntBASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 FITM1-202ENST00000559294 800 ntBASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC25.1■■□□□ 1.61
PDZRN3Q9UPQ7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 MIR1238-201ENST00000408483 83 ntBASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 KRT8P9-201ENST00000558927 1449 ntBASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PDZRN3Q9UPQ7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 AL137013.1-201ENST00000432946 1228 ntBASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC25.08■■□□□ 1.61
PDZRN3Q9UPQ7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
PDZRN3Q9UPQ7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
PDZRN3Q9UPQ7 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
PDZRN3Q9UPQ7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 AC073508.3-201ENST00000619697 1419 ntBASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 KSR1P1-201ENST00000446298 240 ntBASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 DUT-205ENST00000558813 769 ntTSL 2 BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC25.07■■□□□ 1.6
PDZRN3Q9UPQ7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 TERF1P1-201ENST00000311003 1181 ntBASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 PNN-205ENST00000556530 601 ntTSL 2 BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC25.06■■□□□ 1.6
PDZRN3Q9UPQ7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDZRN3Q9UPQ7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms