Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.27■□□□□ 0.99
LIMA1Q9UHB6 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.27■□□□□ 0.99
LIMA1Q9UHB6 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
LIMA1Q9UHB6 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 MIR663A-201ENST00000385250 93 ntBASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 CROCCP5-201ENST00000436658 830 ntBASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 RPS2P52-201ENST00000469610 820 ntBASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 AC006557.6-201ENST00000623071 864 ntBASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
LIMA1Q9UHB6 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 NEFHP1-201ENST00000412845 2629 ntBASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 DUSP5P2-201ENST00000426873 1033 ntBASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 SDHAP1-207ENST00000440850 2000 ntBASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.25■□□□□ 0.99
LIMA1Q9UHB6 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LIMA1Q9UHB6 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 AC092118.2-201ENST00000613495 667 ntBASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.23■□□□□ 0.99
LIMA1Q9UHB6 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMA1Q9UHB6 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms