Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 HLA-G-202ENST00000376815 851 ntBASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 HLA-G-203ENST00000376818 1127 ntBASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 AC092437.1-201ENST00000624794 1048 ntBASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SMARCAL1Q9NZC9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 CYP2T3P-201ENST00000601990 817 ntBASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 AC100791.3-201ENST00000617619 330 ntBASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SMARCAL1Q9NZC9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 AC004911.1-201ENST00000416316 871 ntBASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SMARCAL1Q9NZC9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
SMARCAL1Q9NZC9 DUX4L16-201ENST00000555130 1264 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms