Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PPP4R4Q6NUP7 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 AC105036.2-201ENST00000569468 176 ntBASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 AC069236.1-201ENST00000604339 616 ntBASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 AL109923.1-201ENST00000618799 583 ntBASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.61■□□□□ 0.57
PPP4R4Q6NUP7 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 AC090340.1-201ENST00000620778 4980 ntBASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 GPX1P1-201ENST00000388829 606 ntBASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 AL355802.2-201ENST00000402069 882 ntBASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 AL591742.1-201ENST00000604433 565 ntBASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 CROCCP3-202ENST00000420820 1947 ntBASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PPP4R4Q6NUP7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 AC068338.2-201ENST00000563278 1430 ntBASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 SLC29A4P1-201ENST00000398760 971 ntBASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 AL121832.2-201ENST00000610979 668 ntBASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 AL050303.2-201ENST00000619798 666 ntBASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 PKD1P1-201ENST00000458669 6805 ntBASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
PPP4R4Q6NUP7 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PPP4R4Q6NUP7 KRT8P36-201ENST00000489121 1440 ntBASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms