Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC40Q4G0X9 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 AC142086.2-201ENST00000569753 217 ntBASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC40Q4G0X9 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 AC018445.3-201ENST00000624177 1945 ntBASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 AL355802.2-201ENST00000402069 882 ntBASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC40Q4G0X9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
CCDC40Q4G0X9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 AC120498.8-201ENST00000614275 531 ntBASIC21.36■■□□□ 1.01
CCDC40Q4G0X9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms