Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA11Q9Y5H2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PCDHGA11Q9Y5H2 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 AC005332.7-201ENST00000614046 2005 ntBASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHGA11Q9Y5H2 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA11Q9Y5H2 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
PCDHGA11Q9Y5H2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA11Q9Y5H2 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.89■□□□□ 0.62
PCDHGA11Q9Y5H2 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA11Q9Y5H2 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHGA11Q9Y5H2 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 HLA-L-209ENST00000420110 1011 ntBASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 AL121906.2-201ENST00000621597 723 ntBASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
PCDHGA11Q9Y5H2 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 AL355802.2-201ENST00000402069 882 ntBASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 AC120498.8-201ENST00000614275 531 ntBASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHGA11Q9Y5H2 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 AC093484.2-201ENST00000580996 2166 ntBASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHGA11Q9Y5H2 AC124283.5-201ENST00000624661 1809 ntBASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms