Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 AC092368.3-202ENST00000574180 1591 ntBASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 RPS2P52-201ENST00000469610 820 ntBASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 AC060766.5-201ENST00000590539 871 ntBASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 AC098818.2-201ENST00000564925 2320 ntBASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HIF3AQ9Y2N7 AC124283.5-201ENST00000624661 1809 ntBASIC17.58■□□□□ 0.41
HIF3AQ9Y2N7 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.58■□□□□ 0.41
HIF3AQ9Y2N7 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
HIF3AQ9Y2N7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HIF3AQ9Y2N7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 AP000974.1-201ENST00000623909 2387 ntBASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 PNMA6B-201ENST00000538162 1200 ntBASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 GXYLT1P5-201ENST00000614548 1189 ntBASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 AL121906.2-201ENST00000621597 723 ntBASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HIF3AQ9Y2N7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 AL138781.1-201ENST00000566567 1274 ntBASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 AC083880.1-201ENST00000608266 535 ntBASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HIF3AQ9Y2N7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms