Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.17■□□□□ 0.82
HPS4Q9NQG7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 AC104076.2-201ENST00000448912 469 ntBASIC20.16■□□□□ 0.82
HPS4Q9NQG7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 AC097488.1-201ENST00000507834 756 ntBASIC20.16■□□□□ 0.82
HPS4Q9NQG7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 C2orf69P3-201ENST00000565542 1120 ntBASIC20.16■□□□□ 0.82
HPS4Q9NQG7 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 HLA-A-209ENST00000638375 975 ntBASIC20.16■□□□□ 0.82
HPS4Q9NQG7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HPS4Q9NQG7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 TSPY14P-201ENST00000303979 915 ntBASIC20.15■□□□□ 0.82
HPS4Q9NQG7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 CRYGFP-201ENST00000418459 633 ntBASIC20.15■□□□□ 0.82
HPS4Q9NQG7 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
HPS4Q9NQG7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.14■□□□□ 0.82
HPS4Q9NQG7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
HPS4Q9NQG7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 AC008040.2-201ENST00000461049 708 ntBASIC20.14■□□□□ 0.81
HPS4Q9NQG7 ECEL1P2-202ENST00000465689 757 ntBASIC20.14■□□□□ 0.81
HPS4Q9NQG7 EGLN1P1-201ENST00000531623 762 ntBASIC20.14■□□□□ 0.81
HPS4Q9NQG7 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 AC130371.2-201ENST00000619443 611 ntBASIC20.14■□□□□ 0.81
HPS4Q9NQG7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
HPS4Q9NQG7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms