Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.58■□□□□ 0.4
LSM3P62310 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
LSM3P62310 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LSM3P62310 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LSM3P62310 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.57■□□□□ 0.4
LSM3P62310 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LSM3P62310 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LSM3P62310 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.57■□□□□ 0.4
LSM3P62310 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 KRT16P3-201ENST00000439127 1283 ntBASIC17.57■□□□□ 0.4
LSM3P62310 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 AC011298.3-201ENST00000615796 283 ntBASIC17.57■□□□□ 0.4
LSM3P62310 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.57■□□□□ 0.4
LSM3P62310 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.57■□□□□ 0.4
LSM3P62310 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LSM3P62310 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LSM3P62310 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LSM3P62310 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.56■□□□□ 0.4
LSM3P62310 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
LSM3P62310 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.56■□□□□ 0.4
LSM3P62310 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LSM3P62310 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LSM3P62310 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.56■□□□□ 0.4
LSM3P62310 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
LSM3P62310 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LSM3P62310 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.56■□□□□ 0.4
LSM3P62310 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
LSM3P62310 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
LSM3P62310 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LSM3P62310 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.56■□□□□ 0.4
LSM3P62310 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LSM3P62310 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LSM3P62310 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
LSM3P62310 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LSM3P62310 POU5F1P4-201ENST00000413175 1085 ntBASIC17.55■□□□□ 0.4
LSM3P62310 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC17.55■□□□□ 0.4
LSM3P62310 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC17.55■□□□□ 0.4
LSM3P62310 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LSM3P62310 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.55■□□□□ 0.4
LSM3P62310 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LSM3P62310 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LSM3P62310 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LSM3P62310 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LSM3P62310 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.55■□□□□ 0.4
LSM3P62310 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LSM3P62310 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LSM3P62310 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LSM3P62310 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LSM3P62310 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.54■□□□□ 0.4
LSM3P62310 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
LSM3P62310 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LSM3P62310 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.54■□□□□ 0.4
LSM3P62310 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LSM3P62310 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LSM3P62310 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms