Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 AC061975.6-201ENST00000579045 1553 ntBASIC13.62□□□□□ -0.23
CKS1BP61024 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC13.62□□□□□ -0.23
CKS1BP61024 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CKS1BP61024 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
CKS1BP61024 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
CKS1BP61024 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC13.62□□□□□ -0.23
CKS1BP61024 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC13.62□□□□□ -0.23
CKS1BP61024 BID-204ENST00000399767 2129 ntTSL 2 BASIC13.62□□□□□ -0.23
CKS1BP61024 AC245052.3-201ENST00000450182 901 ntBASIC13.62□□□□□ -0.23
CKS1BP61024 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC13.62□□□□□ -0.23
CKS1BP61024 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 EEF1DP3-203ENST00000566025 782 ntBASIC13.62□□□□□ -0.23
CKS1BP61024 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC13.62□□□□□ -0.23
CKS1BP61024 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC13.62□□□□□ -0.23
CKS1BP61024 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 AC018470.1-201ENST00000624790 3129 ntBASIC13.62□□□□□ -0.23
CKS1BP61024 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
CKS1BP61024 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CKS1BP61024 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC13.61□□□□□ -0.23
CKS1BP61024 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC13.61□□□□□ -0.23
CKS1BP61024 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CKS1BP61024 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC13.61□□□□□ -0.23
CKS1BP61024 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC13.61□□□□□ -0.23
CKS1BP61024 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC13.61□□□□□ -0.23
CKS1BP61024 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CKS1BP61024 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CKS1BP61024 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.61□□□□□ -0.23
CKS1BP61024 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CKS1BP61024 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC13.61□□□□□ -0.23
CKS1BP61024 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
CKS1BP61024 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CKS1BP61024 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 MIR572-201ENST00000384983 95 ntBASIC13.6□□□□□ -0.23
CKS1BP61024 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 PBX2P1-201ENST00000493219 1291 ntBASIC13.6□□□□□ -0.23
CKS1BP61024 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CKS1BP61024 GRAMD4P4-201ENST00000613563 1115 ntBASIC13.6□□□□□ -0.23
CKS1BP61024 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC13.6□□□□□ -0.23
CKS1BP61024 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CKS1BP61024 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CKS1BP61024 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CKS1BP61024 AC116562.4-201ENST00000641316 2276 ntBASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms