Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HLA-DMBP28068 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HLA-DMBP28068 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC14.83□□□□□ -0.03
HLA-DMBP28068 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC14.83□□□□□ -0.03
HLA-DMBP28068 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HLA-DMBP28068 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HLA-DMBP28068 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC14.83□□□□□ -0.03
HLA-DMBP28068 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
HLA-DMBP28068 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
HLA-DMBP28068 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HLA-DMBP28068 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HLA-DMBP28068 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
HLA-DMBP28068 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
HLA-DMBP28068 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
HLA-DMBP28068 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
HLA-DMBP28068 AC018553.1-201ENST00000616682 1458 ntBASIC14.82□□□□□ -0.04
HLA-DMBP28068 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 BX276092.2-201ENST00000417668 665 ntBASIC14.82□□□□□ -0.04
HLA-DMBP28068 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 RGMA-211ENST00000557420 989 ntTSL 3 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 AC133041.1-202ENST00000642053 222 ntBASIC14.82□□□□□ -0.04
HLA-DMBP28068 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
HLA-DMBP28068 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC14.82□□□□□ -0.04
HLA-DMBP28068 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.81□□□□□ -0.04
HLA-DMBP28068 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HLA-DMBP28068 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms