Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.342e-8■■■■■ 34.4
DDX55Q8NHQ9 RAB11FIP3-203ENST00000434585 3550 ntAPPRIS ALT2 TSL 512.8□□□□□ -0.362e-8■■■■■ 34.4
DDX55Q8NHQ9 RAB11FIP3-205ENST00000450428 3203 ntTSL 2 BASIC12.64□□□□□ -0.392e-8■■■■■ 34.4
DDX55Q8NHQ9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.776e-15■■■■■ 34.2
DDX55Q8NHQ9 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.99■■■□□ 2.074e-7■■■■■ 34
DDX55Q8NHQ9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.918e-15■■■■■ 34
DDX55Q8NHQ9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.818e-15■■■■■ 34
DDX55Q8NHQ9 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.75■□□□□ 0.431e-8■■■■■ 34
DDX55Q8NHQ9 SLIRP-207ENST00000556831 729 ntTSL 217.09■□□□□ 0.331e-8■■■■■ 34
DDX55Q8NHQ9 ARPC5L-203ENST00000465124 1877 ntTSL 216.19■□□□□ 0.188e-15■■■■■ 34
DDX55Q8NHQ9 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC15.86■□□□□ 0.137e-8■■■■■ 34
DDX55Q8NHQ9 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.071e-8■■■■■ 34
DDX55Q8NHQ9 SLIRP-209ENST00000557342 408 ntTSL 1 (best) BASIC15.14■□□□□ 0.011e-8■■■■■ 34
DDX55Q8NHQ9 SLIRP-211ENST00000557623 865 ntTSL 2 BASIC15.14■□□□□ 0.011e-8■■■■■ 34
DDX55Q8NHQ9 SLIRP-206ENST00000556375 408 ntTSL 214.07□□□□□ -0.161e-8■■■■■ 34
DDX55Q8NHQ9 SLIRP-205ENST00000556310 626 ntTSL 214.07□□□□□ -0.161e-8■■■■■ 34
DDX55Q8NHQ9 SLIRP-212ENST00000613856 420 ntAPPRIS ALT1 TSL 2 BASIC13.46□□□□□ -0.251e-8■■■■■ 34
DDX55Q8NHQ9 RBBP6-201ENST00000319715 6229 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.723e-10■■■■■ 34
DDX55Q8NHQ9 SLIRP-204ENST00000555890 471 ntTSL 27.78□□□□□ -1.161e-8■■■■■ 34
DDX55Q8NHQ9 RBBP6-205ENST00000562430 6482 ntTSL 1 (best)6.42□□□□□ -1.383e-10■■■■■ 34
DDX55Q8NHQ9 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.42□□□□□ -1.543e-10■■■■■ 34
DDX55Q8NHQ9 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.31□□□□□ -1.723e-10■■■■■ 34
DDX55Q8NHQ9 SLIRP-202ENST00000553981 285 ntTSL 34.04□□□□□ -1.761e-8■■■■■ 34
DDX55Q8NHQ9 PRDX2-203ENST00000466174 1717 ntTSL 1 (best)15.54■□□□□ 0.081e-10■■■■■ 33.9
DDX55Q8NHQ9 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC15.04■□□□□ -01e-10■■■■■ 33.9
DDX55Q8NHQ9 PRDX2-201ENST00000301522 987 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.131e-10■■■■■ 33.9
DDX55Q8NHQ9 HOOK2-213ENST00000589765 108 ntTSL 510.91□□□□□ -0.661e-10■■■■■ 33.9
DDX55Q8NHQ9 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.644e-9■■■■■ 33.9
DDX55Q8NHQ9 MXD3-206ENST00000503782 1854 ntTSL 230.4■■■□□ 2.464e-9■■■■■ 33.9
DDX55Q8NHQ9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.414e-9■■■■■ 33.9
DDX55Q8NHQ9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC28.43■■■□□ 2.144e-9■■■■■ 33.9
DDX55Q8NHQ9 MXD3-205ENST00000503473 2279 ntTSL 526.82■■□□□ 1.884e-9■■■■■ 33.9
DDX55Q8NHQ9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.59■□□□□ 0.894e-9■■■■■ 33.9
DDX55Q8NHQ9 HP1BP3-209ENST00000437575 473 ntTSL 331.06■■■□□ 2.562e-7■■■■■ 33.8
DDX55Q8NHQ9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.62■■■□□ 2.172e-7■■■■■ 33.8
DDX55Q8NHQ9 MTFP1-204ENST00000412752 759 ntTSL 325.69■■□□□ 1.72e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-210ENST00000438032 1159 ntTSL 525.6■■□□□ 1.692e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-211ENST00000443615 557 ntTSL 325.2■■□□□ 1.622e-7■■■■■ 33.8
DDX55Q8NHQ9 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC24.57■■□□□ 1.522e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC24.43■■□□□ 1.52e-7■■■■■ 33.8
DDX55Q8NHQ9 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC24.39■■□□□ 1.492e-7■■■■■ 33.8
DDX55Q8NHQ9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.412e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-206ENST00000419490 538 ntTSL 423.17■■□□□ 1.32e-7■■■■■ 33.8
DDX55Q8NHQ9 PKD1-209ENST00000472659 661 ntTSL 322.84■■□□□ 1.252e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-208ENST00000424732 970 ntTSL 322.55■■□□□ 1.22e-7■■■■■ 33.8
DDX55Q8NHQ9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.96■■□□□ 1.112e-7■■■■■ 33.8
DDX55Q8NHQ9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.952e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-204ENST00000414993 727 ntTSL 419.86■□□□□ 0.772e-7■■■■■ 33.8
DDX55Q8NHQ9 PKD1-226ENST00000562425 608 ntTSL 319.82■□□□□ 0.762e-7■■■■■ 33.8
DDX55Q8NHQ9 PKD1-236ENST00000568796 447 ntTSL 319.34■□□□□ 0.692e-7■■■■■ 33.8
DDX55Q8NHQ9 ACAP3-206ENST00000467278 2725 ntTSL 1 (best)17.62■□□□□ 0.411e-11■■■■■ 33.8
DDX55Q8NHQ9 CTSL-204ENST00000375894 975 ntTSL 317.23■□□□□ 0.352e-7■■■■■ 33.8
DDX55Q8NHQ9 PKD1-220ENST00000487932 6464 ntTSL 516.83■□□□□ 0.292e-7■■■■■ 33.8
DDX55Q8NHQ9 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.152e-7■■■■■ 33.8
DDX55Q8NHQ9 USP5-204ENST00000537267 2522 ntTSL 515.24■□□□□ 0.032e-7■■■■■ 33.8
DDX55Q8NHQ9 AC004832.3-203ENST00000439023 694 ntTSL 514.87□□□□□ -0.032e-7■■■■■ 33.8
DDX55Q8NHQ9 AC004832.3-201ENST00000454552 872 ntTSL 214.87□□□□□ -0.032e-7■■■■■ 33.8
DDX55Q8NHQ9 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.042e-7■■■■■ 33.8
DDX55Q8NHQ9 USP5-202ENST00000389231 3083 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.412e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-205ENST00000417710 572 ntTSL 512.01□□□□□ -0.492e-7■■■■■ 33.8
DDX55Q8NHQ9 RICTOR-206ENST00000510711 3126 ntTSL 210.01□□□□□ -0.812e-7■■■■■ 33.8
DDX55Q8NHQ9 RICTOR-209ENST00000514735 686 ntTSL 37.94□□□□□ -1.142e-7■■■■■ 33.8
DDX55Q8NHQ9 HP1BP3-212ENST00000487117 1598 ntTSL 27.53□□□□□ -1.22e-7■■■■■ 33.8
DDX55Q8NHQ9 RICTOR-208ENST00000513566 1762 ntTSL 1 (best)6.62□□□□□ -1.352e-7■■■■■ 33.8
DDX55Q8NHQ9 RICTOR-207ENST00000511516 7312 ntTSL 1 (best)3.4□□□□□ -1.862e-7■■■■■ 33.8
DDX55Q8NHQ9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.23□□□□□ -1.892e-7■■■■■ 33.8
DDX55Q8NHQ9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.022e-7■■■■■ 33.8
DDX55Q8NHQ9 ANKRD52-203ENST00000548241 651 ntTSL 315.84■□□□□ 0.131e-9■■■■■ 33.7
DDX55Q8NHQ9 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.121e-9■■■■■ 33.7
DDX55Q8NHQ9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.23e-7■■■■■ 33.6
DDX55Q8NHQ9 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.94■■□□□ 1.15e-17■■■■■ 33.6
DDX55Q8NHQ9 EEF1E1-204ENST00000502429 591 ntTSL 310.8□□□□□ -0.685e-17■■■■■ 33.6
DDX55Q8NHQ9 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.555e-17■■■■■ 33.6
DDX55Q8NHQ9 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.635e-17■■■■■ 33.6
DDX55Q8NHQ9 ARHGEF1-216ENST00000598587 359 ntTSL 214.54□□□□□ -0.081e-6■■■■■ 33.4
DDX55Q8NHQ9 ARHGEF1-215ENST00000598444 425 ntTSL 210.98□□□□□ -0.651e-6■■■■■ 33.4
DDX55Q8NHQ9 ASPSCR1-213ENST00000582355 1246 ntTSL 528.86■■■□□ 2.212e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-219ENST00000584454 1919 ntTSL 1 (best)25.58■■□□□ 1.692e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.52■■□□□ 1.682e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.542e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.492e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-220ENST00000585140 447 ntTSL 323.23■■□□□ 1.312e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-221ENST00000585274 984 ntTSL 522.24■■□□□ 1.152e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-214ENST00000582404 534 ntTSL 321.87■■□□□ 1.092e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-210ENST00000581608 2387 ntTSL 221.76■■□□□ 1.072e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-218ENST00000583744 539 ntTSL 419.14■□□□□ 0.652e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-206ENST00000578361 590 ntTSL 218.82■□□□□ 0.62e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-204ENST00000577733 5503 ntTSL 218.54■□□□□ 0.562e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-205ENST00000578236 3277 ntTSL 214.26□□□□□ -0.132e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-215ENST00000583142 532 ntTSL 313.93□□□□□ -0.182e-13■■■■■ 33.3
DDX55Q8NHQ9 ASPSCR1-217ENST00000583693 3976 ntTSL 213.61□□□□□ -0.232e-13■■■■■ 33.3
DDX55Q8NHQ9 SNORD3B-1-201ENST00000577988 758 ntBASIC16.74■□□□□ 0.272e-7■■■■■ 33.3
DDX55Q8NHQ9 SNORD3B-1-203ENST00000631292 217 nt13.27□□□□□ -0.292e-7■■■■■ 33.3
DDX55Q8NHQ9 SNORD3B-1-202ENST00000617128 218 nt12.9□□□□□ -0.342e-7■■■■■ 33.3
DDX55Q8NHQ9 VASP-202ENST00000586014 1725 ntTSL 522.85■■□□□ 1.252e-29■■■■■ 33.3
DDX55Q8NHQ9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.462e-29■■■■■ 33.3
DDX55Q8NHQ9 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.46■■□□□ 1.193e-10■■■■■ 33.2
DDX55Q8NHQ9 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC20.28■□□□□ 0.843e-10■■■■■ 33.2
DDX55Q8NHQ9 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.464e-8■■■■■ 33.2
DDX55Q8NHQ9 LAMTOR4-210ENST00000488338 533 ntTSL 317.64■□□□□ 0.415e-13■■■■■ 33.2
Retrieved 100 of 15,504 protein–RNA pairs in 345.9 ms