Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 COQ8A-206ENST00000479852 1938 ntTSL 1 (best)22.93■■□□□ 1.261e-6■■■□□ 17.3
DDX42Q86XP3 SLC6A8-210ENST00000485324 2401 ntTSL 222.12■■□□□ 1.132e-6■■■□□ 17.3
DDX42Q86XP3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.931e-6■■■□□ 17.3
DDX42Q86XP3 RNF44-207ENST00000513029 1647 ntTSL 218.66■□□□□ 0.581e-6■■■□□ 17.3
DDX42Q86XP3 RNF44-204ENST00000506378 848 ntTSL 218.3■□□□□ 0.521e-6■■■□□ 17.3
DDX42Q86XP3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.361e-6■■■□□ 17.3
DDX42Q86XP3 COQ8A-207ENST00000485462 2141 ntTSL 1 (best)17■□□□□ 0.311e-6■■■□□ 17.3
DDX42Q86XP3 FASN-207ENST00000635197 627 ntTSL 316.95■□□□□ 0.31e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-207ENST00000419312 473 ntTSL 416.88■□□□□ 0.291e-6■■■□□ 17.3
DDX42Q86XP3 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.82■□□□□ 0.282e-6■■■□□ 17.3
DDX42Q86XP3 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.061e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-201ENST00000340926 2128 ntTSL 515.34■□□□□ 0.051e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-218ENST00000450881 513 ntTSL 415.24■□□□□ 0.031e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-234ENST00000493681 526 ntTSL 313.1□□□□□ -0.311e-6■■■□□ 17.3
DDX42Q86XP3 RNF44-208ENST00000515051 596 ntTSL 412.78□□□□□ -0.361e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-212ENST00000429178 3701 ntTSL 1 (best)12.12□□□□□ -0.471e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-206ENST00000413171 4488 ntTSL 511.92□□□□□ -0.51e-6■■■□□ 17.3
DDX42Q86XP3 H3F3A-203ENST00000366815 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.531e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-202ENST00000389574 3812 ntAPPRIS P3 TSL 2 BASIC11.23□□□□□ -0.611e-6■■■□□ 17.3
DDX42Q86XP3 DAZAP1-206ENST00000587833 560 ntTSL 510.96□□□□□ -0.651e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-205ENST00000405266 4062 ntTSL 5 BASIC10.88□□□□□ -0.671e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-210ENST00000425407 3868 ntAPPRIS P3 TSL 5 BASIC10.51□□□□□ -0.731e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-203ENST00000401592 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.781e-6■■■□□ 17.3
DDX42Q86XP3 TRIM25-203ENST00000570473 498 ntTSL 39.9□□□□□ -0.821e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-219ENST00000452783 3717 ntTSL 2 BASIC9.89□□□□□ -0.831e-6■■■□□ 17.3
DDX42Q86XP3 FASN-213ENST00000637693 100 ntTSL 59.86□□□□□ -0.831e-6■■■□□ 17.3
DDX42Q86XP3 NPM1-208ENST00000521672 597 ntTSL 58.66□□□□□ -1.021e-6■■■□□ 17.3
DDX42Q86XP3 H3F3A-201ENST00000366813 1308 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.031e-6■■■□□ 17.3
DDX42Q86XP3 NPM1-204ENST00000517671 1338 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.071e-6■■■□□ 17.3
DDX42Q86XP3 NPM1-205ENST00000518587 670 ntTSL 26.68□□□□□ -1.341e-6■■■□□ 17.3
DDX42Q86XP3 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.59□□□□□ -1.351e-6■■■□□ 17.3
DDX42Q86XP3 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.38□□□□□ -1.391e-6■■■□□ 17.3
DDX42Q86XP3 SUN1-228ENST00000471349 569 ntTSL 44.9□□□□□ -1.631e-6■■■□□ 17.3
DDX42Q86XP3 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.13e-6■■■□□ 17.2
DDX42Q86XP3 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.013e-6■■■□□ 17.2
DDX42Q86XP3 STIM2-209ENST00000494628 726 ntTSL 515.07■□□□□ 03e-11■■■□□ 17.2
DDX42Q86XP3 AARS-207ENST00000569825 871 ntTSL 217.95■□□□□ 0.462e-6■■■□□ 16.9
DDX42Q86XP3 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.92■□□□□ 0.463e-9■■■□□ 16.9
DDX42Q86XP3 SRRM2-220ENST00000574593 1440 ntTSL 316.69■□□□□ 0.263e-9■■■□□ 16.9
DDX42Q86XP3 SRRM2-213ENST00000573311 732 ntTSL 215.72■□□□□ 0.113e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-216ENST00000550184 1564 ntTSL 515.41■□□□□ 0.063e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.033e-9■■■□□ 16.9
DDX42Q86XP3 SRRM2-210ENST00000572721 841 ntTSL 214.86□□□□□ -0.033e-9■■■□□ 16.9
DDX42Q86XP3 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.123e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.153e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-210ENST00000548400 573 ntTSL 3 BASIC13.54□□□□□ -0.243e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-215ENST00000549566 685 ntTSL 2 BASIC13.45□□□□□ -0.263e-9■■■□□ 16.9
DDX42Q86XP3 MVD-202ENST00000561895 499 ntTSL 213.34□□□□□ -0.276e-10■■■□□ 16.9
DDX42Q86XP3 SRRM2-211ENST00000572883 887 ntTSL 211.17□□□□□ -0.623e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-206ENST00000547408 683 ntTSL 3 BASIC9.97□□□□□ -0.813e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-205ENST00000546845 452 ntTSL 39.65□□□□□ -0.863e-9■■■□□ 16.9
DDX42Q86XP3 EIF2AK1-209ENST00000490523 905 ntTSL 29.45□□□□□ -0.93e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-207ENST00000547649 655 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.923e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-201ENST00000293422 664 ntAPPRIS ALT1 TSL 2 BASIC8.54□□□□□ -1.043e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-211ENST00000548580 528 ntTSL 2 BASIC7.65□□□□□ -1.183e-9■■■□□ 16.9
DDX42Q86XP3 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.1□□□□□ -1.433e-9■■■□□ 16.9
DDX42Q86XP3 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)14.14□□□□□ -0.155e-7■■■□□ 16.8
DDX42Q86XP3 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.12e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.882e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-224ENST00000568435 935 ntTSL 1 (best)17.79■□□□□ 0.442e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.372e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.23■□□□□ 0.352e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-223ENST00000567555 554 ntTSL 1 (best)16.58■□□□□ 0.242e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.192e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.2■□□□□ 0.182e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.162e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.092e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-211ENST00000564521 2534 ntTSL 514.54□□□□□ -0.082e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.12e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.12e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-216ENST00000566012 553 ntTSL 514.4□□□□□ -0.12e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC14.12□□□□□ -0.152e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-220ENST00000566846 512 ntTSL 212.36□□□□□ -0.432e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-210ENST00000563987 586 ntTSL 211.5□□□□□ -0.572e-13■■■□□ 16.6
DDX42Q86XP3 ALDOA-205ENST00000562168 666 ntTSL 311.07□□□□□ -0.642e-13■■■□□ 16.6
DDX42Q86XP3 AARS-201ENST00000261772 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.323e-6■■■□□ 16.6
DDX42Q86XP3 ZNF251-204ENST00000530353 2342 ntTSL 224.89■■□□□ 1.587e-6■■■□□ 16.5
DDX42Q86XP3 TRAF4-211ENST00000478021 718 ntTSL 323.95■■□□□ 1.423e-8■■■□□ 16.5
DDX42Q86XP3 TRAF4-207ENST00000461195 787 ntTSL 223.74■■□□□ 1.393e-8■■■□□ 16.5
DDX42Q86XP3 TRAF4-204ENST00000422344 631 ntTSL 323.14■■□□□ 1.293e-8■■■□□ 16.5
DDX42Q86XP3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.12■■□□□ 1.293e-8■■■□□ 16.5
DDX42Q86XP3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.94■■□□□ 1.263e-8■■■□□ 16.5
DDX42Q86XP3 PPT2-EGFL8-207ENST00000585246 1051 ntAPPRIS ALT2 TSL 222.62■■□□□ 1.217e-6■■■□□ 16.5
DDX42Q86XP3 TRAF4-203ENST00000394925 702 ntTSL 222.48■■□□□ 1.193e-8■■■□□ 16.5
DDX42Q86XP3 TRAF4-216ENST00000586813 789 ntTSL 320.58■□□□□ 0.893e-8■■■□□ 16.5
DDX42Q86XP3 TMC6-204ENST00000585849 552 ntTSL 220.35■□□□□ 0.857e-6■■■□□ 16.5
DDX42Q86XP3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.817e-6■■■□□ 16.5
DDX42Q86XP3 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.763e-8■■■□□ 16.5
DDX42Q86XP3 PPT2-EGFL8-201ENST00000421600 999 ntAPPRIS ALT2 TSL 519.51■□□□□ 0.717e-6■■■□□ 16.5
DDX42Q86XP3 EGFL7-207ENST00000492862 723 ntTSL 519.1■□□□□ 0.653e-8■■■□□ 16.5
DDX42Q86XP3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.647e-6■■■□□ 16.5
DDX42Q86XP3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.627e-6■■■□□ 16.5
DDX42Q86XP3 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.67e-6■■■□□ 16.5
DDX42Q86XP3 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.547e-6■■■□□ 16.5
DDX42Q86XP3 PPT2-EGFL8-206ENST00000583227 1540 ntAPPRIS ALT2 TSL 518.32■□□□□ 0.527e-6■■■□□ 16.5
DDX42Q86XP3 EGFL7-205ENST00000490469 456 ntTSL 517.99■□□□□ 0.473e-8■■■□□ 16.5
DDX42Q86XP3 PPT2-EGFL8-204ENST00000453656 1327 ntTSL 217.95■□□□□ 0.467e-6■■■□□ 16.5
DDX42Q86XP3 TPCN1-219ENST00000552077 3293 ntTSL 217.78■□□□□ 0.447e-6■■■□□ 16.5
DDX42Q86XP3 PPT2-EGFL8-203ENST00000428388 2878 ntAPPRIS P5 TSL 217.57■□□□□ 0.47e-6■■■□□ 16.5
DDX42Q86XP3 TMC6-222ENST00000592076 693 ntTSL 317.19■□□□□ 0.347e-6■■■□□ 16.5
Retrieved 100 of 2,477 protein–RNA pairs in 61.7 ms