Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RETREG3Q86VR2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RETREG3Q86VR2 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RETREG3Q86VR2 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RETREG3Q86VR2 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.47■■□□□ 1.51
RETREG3Q86VR2 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
RETREG3Q86VR2 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
RETREG3Q86VR2 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC24.46■■□□□ 1.51
RETREG3Q86VR2 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RETREG3Q86VR2 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
RETREG3Q86VR2 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
RETREG3Q86VR2 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.45■■□□□ 1.51
RETREG3Q86VR2 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC24.45■■□□□ 1.5
RETREG3Q86VR2 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.45■■□□□ 1.5
RETREG3Q86VR2 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RETREG3Q86VR2 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RETREG3Q86VR2 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC24.44■■□□□ 1.5
RETREG3Q86VR2 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.44■■□□□ 1.5
RETREG3Q86VR2 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RETREG3Q86VR2 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.43■■□□□ 1.5
RETREG3Q86VR2 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RETREG3Q86VR2 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC24.43■■□□□ 1.5
RETREG3Q86VR2 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RETREG3Q86VR2 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
RETREG3Q86VR2 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC24.42■■□□□ 1.5
RETREG3Q86VR2 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
RETREG3Q86VR2 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RETREG3Q86VR2 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC24.42■■□□□ 1.5
RETREG3Q86VR2 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC24.42■■□□□ 1.5
RETREG3Q86VR2 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
RETREG3Q86VR2 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
RETREG3Q86VR2 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RETREG3Q86VR2 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
RETREG3Q86VR2 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RETREG3Q86VR2 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
RETREG3Q86VR2 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RETREG3Q86VR2 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
RETREG3Q86VR2 AC100797.4-201ENST00000631653 1827 ntBASIC24.4■■□□□ 1.5
RETREG3Q86VR2 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.4■■□□□ 1.5
RETREG3Q86VR2 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
RETREG3Q86VR2 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
RETREG3Q86VR2 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
RETREG3Q86VR2 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC24.38■■□□□ 1.49
RETREG3Q86VR2 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
RETREG3Q86VR2 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
RETREG3Q86VR2 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.37■■□□□ 1.49
RETREG3Q86VR2 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
RETREG3Q86VR2 SETD8P1-201ENST00000623146 1180 ntBASIC24.37■■□□□ 1.49
RETREG3Q86VR2 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
RETREG3Q86VR2 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
RETREG3Q86VR2 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
RETREG3Q86VR2 DENR-202ENST00000455982 1052 ntTSL 5 BASIC24.36■■□□□ 1.49
RETREG3Q86VR2 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RETREG3Q86VR2 RARRES2P7-201ENST00000567349 469 ntBASIC24.35■■□□□ 1.49
RETREG3Q86VR2 AC135731.1-201ENST00000569415 2548 ntBASIC24.35■■□□□ 1.49
RETREG3Q86VR2 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RETREG3Q86VR2 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC24.35■■□□□ 1.49
RETREG3Q86VR2 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
RETREG3Q86VR2 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.34■■□□□ 1.49
RETREG3Q86VR2 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
RETREG3Q86VR2 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
RETREG3Q86VR2 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
RETREG3Q86VR2 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.33■■□□□ 1.49
RETREG3Q86VR2 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
RETREG3Q86VR2 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
RETREG3Q86VR2 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
RETREG3Q86VR2 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
RETREG3Q86VR2 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.31■■□□□ 1.48
RETREG3Q86VR2 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.31■■□□□ 1.48
RETREG3Q86VR2 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
RETREG3Q86VR2 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.3■■□□□ 1.48
RETREG3Q86VR2 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.3■■□□□ 1.48
RETREG3Q86VR2 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
RETREG3Q86VR2 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RETREG3Q86VR2 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
RETREG3Q86VR2 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RETREG3Q86VR2 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RETREG3Q86VR2 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.28■■□□□ 1.48
RETREG3Q86VR2 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC24.28■■□□□ 1.48
RETREG3Q86VR2 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RETREG3Q86VR2 AL391121.1-201ENST00000607967 1349 ntBASIC24.28■■□□□ 1.48
RETREG3Q86VR2 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
RETREG3Q86VR2 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RETREG3Q86VR2 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RETREG3Q86VR2 EBPL-202ENST00000378268 680 ntTSL 3 BASIC24.26■■□□□ 1.47
RETREG3Q86VR2 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC24.26■■□□□ 1.47
RETREG3Q86VR2 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.26■■□□□ 1.47
RETREG3Q86VR2 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RETREG3Q86VR2 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC24.25■■□□□ 1.47
RETREG3Q86VR2 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RETREG3Q86VR2 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
RETREG3Q86VR2 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RETREG3Q86VR2 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RETREG3Q86VR2 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RETREG3Q86VR2 AL449106.1-201ENST00000608517 1980 ntBASIC24.25■■□□□ 1.47
RETREG3Q86VR2 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
RETREG3Q86VR2 CAHM-201ENST00000604200 896 ntBASIC24.23■■□□□ 1.47
RETREG3Q86VR2 AP002414.2-202ENST00000590929 1450 ntBASIC24.23■■□□□ 1.47
RETREG3Q86VR2 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC24.23■■□□□ 1.47
RETREG3Q86VR2 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms