Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 ST7-AS1-201ENST00000456775 1889 ntBASIC31.44■■■□□ 2.62
COL1A1P02452 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
COL1A1P02452 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.42■■■□□ 2.62
COL1A1P02452 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL1A1P02452 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
COL1A1P02452 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.41■■■□□ 2.62
COL1A1P02452 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC31.41■■■□□ 2.62
COL1A1P02452 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL1A1P02452 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC31.41■■■□□ 2.62
COL1A1P02452 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC31.41■■■□□ 2.62
COL1A1P02452 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL1A1P02452 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
COL1A1P02452 RARRES2P2-201ENST00000394842 485 ntBASIC31.4■■■□□ 2.62
COL1A1P02452 CHST11-202ENST00000546689 756 ntTSL 2 BASIC31.4■■■□□ 2.62
COL1A1P02452 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.4■■■□□ 2.62
COL1A1P02452 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
COL1A1P02452 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC31.39■■■□□ 2.62
COL1A1P02452 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL1A1P02452 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
COL1A1P02452 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
COL1A1P02452 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
COL1A1P02452 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
COL1A1P02452 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
COL1A1P02452 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.35■■■□□ 2.61
COL1A1P02452 ABHD17AP5-201ENST00000580133 923 ntBASIC31.34■■■□□ 2.61
COL1A1P02452 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
COL1A1P02452 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC31.33■■■□□ 2.61
COL1A1P02452 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
COL1A1P02452 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.61
COL1A1P02452 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
COL1A1P02452 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
COL1A1P02452 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC31.3■■■□□ 2.6
COL1A1P02452 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
COL1A1P02452 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL1A1P02452 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL1A1P02452 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
COL1A1P02452 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
COL1A1P02452 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC31.28■■■□□ 2.6
COL1A1P02452 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
COL1A1P02452 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.27■■■□□ 2.6
COL1A1P02452 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
COL1A1P02452 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC31.27■■■□□ 2.6
COL1A1P02452 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.27■■■□□ 2.6
COL1A1P02452 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.27■■■□□ 2.6
COL1A1P02452 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
COL1A1P02452 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
COL1A1P02452 GPX1-201ENST00000419349 1106 ntBASIC31.25■■■□□ 2.59
COL1A1P02452 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
COL1A1P02452 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC31.23■■■□□ 2.59
COL1A1P02452 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL1A1P02452 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC31.22■■■□□ 2.59
COL1A1P02452 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
COL1A1P02452 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC31.22■■■□□ 2.59
COL1A1P02452 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC31.22■■■□□ 2.59
COL1A1P02452 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
COL1A1P02452 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
COL1A1P02452 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
COL1A1P02452 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
COL1A1P02452 TPT1-202ENST00000379055 948 ntTSL 2 BASIC31.21■■■□□ 2.59
COL1A1P02452 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
COL1A1P02452 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
COL1A1P02452 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
COL1A1P02452 RNF126P1-201ENST00000567452 1320 ntBASIC31.19■■■□□ 2.58
COL1A1P02452 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.19■■■□□ 2.58
COL1A1P02452 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
COL1A1P02452 AC110285.7-201ENST00000624417 1536 ntBASIC31.18■■■□□ 2.58
COL1A1P02452 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
COL1A1P02452 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
COL1A1P02452 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
COL1A1P02452 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC31.17■■■□□ 2.58
COL1A1P02452 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
COL1A1P02452 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL1A1P02452 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
COL1A1P02452 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
COL1A1P02452 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
COL1A1P02452 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.57
COL1A1P02452 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.13■■■□□ 2.57
COL1A1P02452 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
COL1A1P02452 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL1A1P02452 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL1A1P02452 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
COL1A1P02452 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.11■■■□□ 2.57
COL1A1P02452 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL1A1P02452 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.11■■■□□ 2.57
COL1A1P02452 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL1A1P02452 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL1A1P02452 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.1■■■□□ 2.57
COL1A1P02452 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
COL1A1P02452 MEST-211ENST00000437945 1455 ntTSL 5 BASIC31.09■■■□□ 2.57
COL1A1P02452 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
COL1A1P02452 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC31.08■■■□□ 2.57
COL1A1P02452 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC31.08■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms