Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.97■■□□□ 1.11
XRCC3O43542 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
XRCC3O43542 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
XRCC3O43542 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
XRCC3O43542 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
XRCC3O43542 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.96■■□□□ 1.11
XRCC3O43542 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
XRCC3O43542 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
XRCC3O43542 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
XRCC3O43542 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
XRCC3O43542 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
XRCC3O43542 AL449106.1-201ENST00000608517 1980 ntBASIC21.94■■□□□ 1.1
XRCC3O43542 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.94■■□□□ 1.1
XRCC3O43542 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
XRCC3O43542 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
XRCC3O43542 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
XRCC3O43542 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.93■■□□□ 1.1
XRCC3O43542 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.93■■□□□ 1.1
XRCC3O43542 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
XRCC3O43542 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.92■■□□□ 1.1
XRCC3O43542 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
XRCC3O43542 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
XRCC3O43542 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
XRCC3O43542 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
XRCC3O43542 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
XRCC3O43542 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
XRCC3O43542 AL133380.1-201ENST00000506013 324 ntBASIC21.9■■□□□ 1.1
XRCC3O43542 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
XRCC3O43542 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.09
XRCC3O43542 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
XRCC3O43542 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
XRCC3O43542 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
XRCC3O43542 AP002365.1-201ENST00000603448 772 ntBASIC21.88■■□□□ 1.09
XRCC3O43542 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
XRCC3O43542 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
XRCC3O43542 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
XRCC3O43542 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.86■■□□□ 1.09
XRCC3O43542 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
XRCC3O43542 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
XRCC3O43542 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
XRCC3O43542 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
XRCC3O43542 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC3O43542 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC3O43542 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC3O43542 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC3O43542 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
XRCC3O43542 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
XRCC3O43542 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.84■■□□□ 1.09
XRCC3O43542 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC3O43542 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.84■■□□□ 1.09
XRCC3O43542 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
XRCC3O43542 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
XRCC3O43542 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
XRCC3O43542 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
XRCC3O43542 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.82■■□□□ 1.08
XRCC3O43542 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC3O43542 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
XRCC3O43542 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC3O43542 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
XRCC3O43542 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.81■■□□□ 1.08
XRCC3O43542 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
XRCC3O43542 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC21.81■■□□□ 1.08
XRCC3O43542 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC21.81■■□□□ 1.08
XRCC3O43542 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
XRCC3O43542 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.81■■□□□ 1.08
XRCC3O43542 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC3O43542 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.8■■□□□ 1.08
XRCC3O43542 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC3O43542 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.8■■□□□ 1.08
XRCC3O43542 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
XRCC3O43542 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC3O43542 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
XRCC3O43542 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC3O43542 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC3O43542 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC3O43542 AC091060.1-201ENST00000623524 1766 ntBASIC21.79■■□□□ 1.08
XRCC3O43542 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
XRCC3O43542 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
XRCC3O43542 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
XRCC3O43542 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.78■■□□□ 1.08
XRCC3O43542 AC127502.1-201ENST00000399971 1502 ntBASIC21.78■■□□□ 1.08
XRCC3O43542 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
XRCC3O43542 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
XRCC3O43542 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
XRCC3O43542 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC3O43542 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC3O43542 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC3O43542 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
XRCC3O43542 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.77■■□□□ 1.08
XRCC3O43542 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
XRCC3O43542 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC3O43542 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
XRCC3O43542 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
XRCC3O43542 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
XRCC3O43542 AC100797.4-201ENST00000631653 1827 ntBASIC21.75■■□□□ 1.07
XRCC3O43542 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
XRCC3O43542 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
XRCC3O43542 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
XRCC3O43542 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.73■■□□□ 1.07
XRCC3O43542 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms