Protein–RNA interactions for Protein: A0A0B4J276

TRAV25, T-cell receptor alpha variable 25 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV25A0A0B4J276 DUX4L24-201ENST00000617576 1269 ntBASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 DUX4L22-201ENST00000618238 1269 ntBASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 DUX4L20-201ENST00000619712 1269 ntBASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 DUX4L21-201ENST00000622058 1269 ntBASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 DUX4L10-201ENST00000622460 1267 ntBASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 DUX4L25-201ENST00000624915 1269 ntBASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV25A0A0B4J276 WHAMMP2-203ENST00000563942 1603 ntBASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 RNF166-209ENST00000567844 633 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV25A0A0B4J276 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
TRAV25A0A0B4J276 AL139393.2-201ENST00000608721 2025 ntBASIC19.29■□□□□ 0.68
TRAV25A0A0B4J276 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV25A0A0B4J276 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
TRAV25A0A0B4J276 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV25A0A0B4J276 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
TRAV25A0A0B4J276 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV25A0A0B4J276 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC19.27■□□□□ 0.68
TRAV25A0A0B4J276 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV25A0A0B4J276 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV25A0A0B4J276 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC19.27■□□□□ 0.68
TRAV25A0A0B4J276 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC19.27■□□□□ 0.68
TRAV25A0A0B4J276 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV25A0A0B4J276 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.27■□□□□ 0.67
TRAV25A0A0B4J276 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV25A0A0B4J276 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV25A0A0B4J276 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV25A0A0B4J276 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.26■□□□□ 0.67
TRAV25A0A0B4J276 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV25A0A0B4J276 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV25A0A0B4J276 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
TRAV25A0A0B4J276 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV25A0A0B4J276 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
TRAV25A0A0B4J276 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV25A0A0B4J276 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
TRAV25A0A0B4J276 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC19.24■□□□□ 0.67
TRAV25A0A0B4J276 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV25A0A0B4J276 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV25A0A0B4J276 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV25A0A0B4J276 MIR3648-2-201ENST00000581792 180 ntBASIC19.23■□□□□ 0.67
TRAV25A0A0B4J276 MIR3648-1-201ENST00000615959 180 ntBASIC19.23■□□□□ 0.67
TRAV25A0A0B4J276 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV25A0A0B4J276 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRAV25A0A0B4J276 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV25A0A0B4J276 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV25A0A0B4J276 GDI1-215ENST00000630693 786 ntTSL 4 BASIC19.22■□□□□ 0.67
TRAV25A0A0B4J276 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC19.22■□□□□ 0.67
TRAV25A0A0B4J276 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAV25A0A0B4J276 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
TRAV25A0A0B4J276 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
TRAV25A0A0B4J276 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV25A0A0B4J276 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV25A0A0B4J276 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.2■□□□□ 0.66
TRAV25A0A0B4J276 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.2■□□□□ 0.66
TRAV25A0A0B4J276 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAV25A0A0B4J276 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.2■□□□□ 0.66
TRAV25A0A0B4J276 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAV25A0A0B4J276 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
TRAV25A0A0B4J276 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC19.19■□□□□ 0.66
TRAV25A0A0B4J276 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV25A0A0B4J276 CR559946.2-201ENST00000623684 991 ntBASIC19.19■□□□□ 0.66
TRAV25A0A0B4J276 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAV25A0A0B4J276 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAV25A0A0B4J276 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV25A0A0B4J276 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV25A0A0B4J276 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV25A0A0B4J276 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV25A0A0B4J276 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAV25A0A0B4J276 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAV25A0A0B4J276 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAV25A0A0B4J276 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAV25A0A0B4J276 AC110285.7-201ENST00000624417 1536 ntBASIC19.16■□□□□ 0.66
TRAV25A0A0B4J276 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TRAV25A0A0B4J276 AC016575.1-201ENST00000607026 382 ntBASIC19.16■□□□□ 0.66
TRAV25A0A0B4J276 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV25A0A0B4J276 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV25A0A0B4J276 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV25A0A0B4J276 AC008813.1-201ENST00000536597 885 ntBASIC19.15■□□□□ 0.66
TRAV25A0A0B4J276 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV25A0A0B4J276 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRAV25A0A0B4J276 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 MIR639-201ENST00000384974 98 ntBASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 HLA-V-202ENST00000446817 847 ntBASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRAV25A0A0B4J276 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
TRAV25A0A0B4J276 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV25A0A0B4J276 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.13■□□□□ 0.65
TRAV25A0A0B4J276 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV25A0A0B4J276 AC100797.4-201ENST00000631653 1827 ntBASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms