Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 TREX1-205ENST00000625293 1783 ntBASIC19.75■□□□□ 0.75
LHX3Q9UBR4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.75■□□□□ 0.75
LHX3Q9UBR4 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LHX3Q9UBR4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 AFG3L1P-217ENST00000557444 2447 ntBASIC19.73■□□□□ 0.75
LHX3Q9UBR4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 FAM197Y1-201ENST00000421178 764 ntBASIC19.73■□□□□ 0.75
LHX3Q9UBR4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 KSR1P1-201ENST00000446298 240 ntBASIC19.73■□□□□ 0.75
LHX3Q9UBR4 SNORA78-201ENST00000459373 127 ntBASIC19.73■□□□□ 0.75
LHX3Q9UBR4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LHX3Q9UBR4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 TSPY7P-201ENST00000431358 1114 ntBASIC19.72■□□□□ 0.75
LHX3Q9UBR4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 CD177P1-201ENST00000606252 935 ntBASIC19.72■□□□□ 0.75
LHX3Q9UBR4 AP001412.1-201ENST00000608405 714 ntBASIC19.72■□□□□ 0.75
LHX3Q9UBR4 AL445675.2-201ENST00000620291 557 ntBASIC19.72■□□□□ 0.75
LHX3Q9UBR4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.72■□□□□ 0.75
LHX3Q9UBR4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.72■□□□□ 0.75
LHX3Q9UBR4 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 MIR4497-201ENST00000583208 89 ntBASIC19.71■□□□□ 0.75
LHX3Q9UBR4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 CR392000.1-201ENST00000624770 1228 ntBASIC19.71■□□□□ 0.75
LHX3Q9UBR4 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.71■□□□□ 0.75
LHX3Q9UBR4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms