Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 AC103724.3-201ENST00000564481 992 ntBASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
VCX3AQ9NNX9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 YBX1P4-201ENST00000392794 808 ntBASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 AC092028.1-203ENST00000608262 953 ntBASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 FER1L4-210ENST00000615531 5998 ntBASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.23■□□□□ 0.51
VCX3AQ9NNX9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VCX3AQ9NNX9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VCX3AQ9NNX9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms