Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLHC1Q8NHS4 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 TNXA-203ENST00000507684 2038 ntBASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
CLHC1Q8NHS4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 AC020763.4-201ENST00000623414 4170 ntBASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CLHC1Q8NHS4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 MIPEPP3-201ENST00000412105 444 ntBASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 DUSP5P2-201ENST00000426873 1033 ntBASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 AC006970.2-201ENST00000450065 779 ntBASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 AC116351.2-201ENST00000606540 1585 ntBASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CLHC1Q8NHS4 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 AC083906.2-201ENST00000511578 360 ntBASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 AC124283.5-201ENST00000624661 1809 ntBASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLHC1Q8NHS4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLHC1Q8NHS4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms