Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 RBM17P2-201ENST00000616397 1405 ntBASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.17■□□□□ 0.18
PDLIM3Q53GG5 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 DPP3P2-201ENST00000416030 1696 ntBASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 ABHD17AP6-201ENST00000458502 1044 ntBASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 AC010536.3-201ENST00000620306 533 ntBASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 MYC-209ENST00000641252 345 ntBASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PDLIM3Q53GG5 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 AL691432.2-201ENST00000607222 2038 ntBASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 AC018445.3-201ENST00000624177 1945 ntBASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PDLIM3Q53GG5 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 AC116562.4-201ENST00000641316 2276 ntBASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PDLIM3Q53GG5 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms