Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ISCU-204ENST00000535405 819 ntTSL 219.33■□□□□ 0.693e-6■■■■■ 137.9
SF3B1O75533 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.33■□□□□ 0.693e-6■■■■■ 137.9
SF3B1O75533 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.693e-6■■■■■ 137.9
SF3B1O75533 ABI2-220ENST00000447762 741 ntTSL 419.32■□□□□ 0.683e-6■■■■■ 137.9
SF3B1O75533 TMEM44-208ENST00000432352 1445 ntTSL 1 (best)19.32■□□□□ 0.681e-16■■■■■ 137.9
SF3B1O75533 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.31■□□□□ 0.683e-6■■■■■ 137.9
SF3B1O75533 DDX31-207ENST00000482620 1051 ntTSL 519.3■□□□□ 0.683e-6■■■■■ 137.9
SF3B1O75533 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.683e-6■■■■■ 137.9
SF3B1O75533 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.29■□□□□ 0.683e-6■■■■■ 137.9
SF3B1O75533 TRAPPC4-203ENST00000447216 980 ntTSL 219.28■□□□□ 0.683e-6■■■■■ 137.9
SF3B1O75533 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.683e-6■■■■■ 137.9
SF3B1O75533 AP4M1-202ENST00000394061 813 ntTSL 519.25■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.23■□□□□ 0.675e-6■■■■■ 137.9
SF3B1O75533 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.23■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 ALAD-209ENST00000494848 547 ntTSL 219.23■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 TBX18-204ENST00000606521 1262 ntTSL 1 (best)19.23■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 FBXL8-207ENST00000519945 699 ntTSL 519.23■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 VPS51-204ENST00000527646 2144 ntTSL 1 (best)19.22■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 SLC12A7-205ENST00000514994 586 ntTSL 319.22■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 ULK1-203ENST00000540568 2145 ntTSL 219.21■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.21■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 SLC39A11-208ENST00000579988 910 ntTSL 319.21■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 TUBB3-212ENST00000556565 566 ntTSL 419.21■□□□□ 0.673e-6■■■■■ 137.9
SF3B1O75533 KIAA0319L-216ENST00000482929 1524 ntTSL 219.2■□□□□ 0.663e-6■■■■■ 137.9
SF3B1O75533 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.663e-6■■■■■ 137.9
SF3B1O75533 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.663e-6■■■■■ 137.9
SF3B1O75533 VPS51-213ENST00000533827 1078 ntTSL 319.18■□□□□ 0.663e-6■■■■■ 137.9
SF3B1O75533 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.663e-6■■■■■ 137.9
SF3B1O75533 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.14■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 FAM3A-216ENST00000449971 1056 ntTSL 519.13■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.11■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 PMS2P1-201ENST00000431037 1228 ntBASIC19.1■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.09■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 EIPR1-207ENST00000444776 594 ntTSL 419.08■□□□□ 0.653e-6■■■■■ 137.9
SF3B1O75533 FAM3A-212ENST00000434658 1817 ntTSL 519.08■□□□□ 0.643e-6■■■■■ 137.9
SF3B1O75533 TRAM1-202ENST00000518678 535 ntTSL 419.07■□□□□ 0.643e-6■■■■■ 137.9
SF3B1O75533 SH3BP1-202ENST00000417536 2858 ntTSL 219.05■□□□□ 0.643e-6■■■■■ 137.9
SF3B1O75533 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.643e-6■■■■■ 137.9
SF3B1O75533 RPS6KB2-207ENST00000525996 957 ntTSL 519.04■□□□□ 0.643e-6■■■■■ 137.9
SF3B1O75533 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.632e-11■■■■■ 137.9
SF3B1O75533 PASK-212ENST00000485940 561 ntTSL 419.01■□□□□ 0.633e-6■■■■■ 137.9
SF3B1O75533 PPP2R1A-202ENST00000391791 979 ntTSL 219■□□□□ 0.633e-6■■■■■ 137.9
SF3B1O75533 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.633e-6■■■■■ 137.9
SF3B1O75533 DAB2IP-204ENST00000394340 1006 ntTSL 319■□□□□ 0.633e-6■■■■■ 137.9
SF3B1O75533 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.633e-6■■■■■ 137.9
SF3B1O75533 GEMIN7-205ENST00000592351 429 ntTSL 318.96■□□□□ 0.633e-6■■■■■ 137.9
SF3B1O75533 PRR14-206ENST00000564946 2117 ntTSL 218.95■□□□□ 0.623e-6■■■■■ 137.9
SF3B1O75533 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.95■□□□□ 0.623e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-211ENST00000436447 3003 ntTSL 518.94■□□□□ 0.623e-6■■■■■ 137.9
SF3B1O75533 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.94■□□□□ 0.623e-6■■■■■ 137.9
SF3B1O75533 ILVBL-207ENST00000533148 1309 ntTSL 518.94■□□□□ 0.623e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-215ENST00000457926 2919 ntTSL 218.93■□□□□ 0.623e-6■■■■■ 137.9
SF3B1O75533 ESPN-207ENST00000475228 813 ntTSL 518.93■□□□□ 0.621e-16■■■■■ 137.9
SF3B1O75533 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.622e-11■■■■■ 137.9
SF3B1O75533 NR1D2-202ENST00000383773 3129 ntTSL 1 (best)18.9■□□□□ 0.623e-6■■■■■ 137.9
SF3B1O75533 RTN4R-202ENST00000416372 1777 ntAPPRIS ALT2 TSL 318.88■□□□□ 0.613e-6■■■■■ 137.9
SF3B1O75533 CCNDBP1-204ENST00000563065 1450 ntTSL 218.88■□□□□ 0.612e-11■■■■■ 137.9
SF3B1O75533 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.613e-6■■■■■ 137.9
SF3B1O75533 ILVBL-214ENST00000600984 709 ntTSL 318.88■□□□□ 0.613e-6■■■■■ 137.9
SF3B1O75533 VPS37B-202ENST00000371248 2088 ntTSL 318.86■□□□□ 0.612e-11■■■■■ 137.9
SF3B1O75533 TUBGCP2-206ENST00000477923 512 ntTSL 218.84■□□□□ 0.613e-6■■■■■ 137.9
SF3B1O75533 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.81■□□□□ 0.63e-6■■■■■ 137.9
SF3B1O75533 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.8■□□□□ 0.62e-11■■■■■ 137.9
SF3B1O75533 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.8■□□□□ 0.63e-6■■■■■ 137.9
SF3B1O75533 LMBR1L-205ENST00000547670 1866 ntTSL 1 (best)18.78■□□□□ 0.63e-6■■■■■ 137.9
SF3B1O75533 TRAM1-203ENST00000520700 542 ntTSL 518.76■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 SH3TC1-213ENST00000507891 558 ntTSL 518.75■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.74■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 LUC7L-214ENST00000467552 569 ntTSL 1 (best)18.74■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 CCNDBP1-211ENST00000567434 713 ntTSL 318.74■□□□□ 0.592e-11■■■■■ 137.9
SF3B1O75533 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.73■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 TBC1D13-203ENST00000466056 839 ntTSL 318.71■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 CBX8-202ENST00000413392 777 ntTSL 318.71■□□□□ 0.593e-6■■■■■ 137.9
SF3B1O75533 STX18-AS1-202ENST00000502693 724 ntTSL 318.68■□□□□ 0.583e-6■■■■■ 137.9
SF3B1O75533 TUBB3-211ENST00000556536 925 ntTSL 318.68■□□□□ 0.583e-6■■■■■ 137.9
SF3B1O75533 PTGES2-206ENST00000476748 699 ntTSL 218.66■□□□□ 0.583e-6■■■■■ 137.9
SF3B1O75533 PRR14-201ENST00000287463 2124 ntTSL 218.65■□□□□ 0.583e-6■■■■■ 137.9
SF3B1O75533 CLTA-205ENST00000464497 1890 ntTSL 518.64■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 RPL39-202ENST00000468844 1915 ntTSL 1 (best)18.63■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 PRKCZ-216ENST00000479566 501 ntTSL 318.63■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 KIAA0319L-219ENST00000492888 872 ntTSL 318.63■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 AFG3L1P-204ENST00000421164 1706 ntTSL 1 (best)18.63■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 CHCHD3-202ENST00000423635 1310 ntTSL 1 (best)18.61■□□□□ 0.578e-7■■■■■ 137.9
SF3B1O75533 ZFP36L1-206ENST00000557086 727 ntTSL 218.61■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.573e-6■■■■■ 137.9
SF3B1O75533 MYO1C-208ENST00000571715 541 ntTSL 418.57■□□□□ 0.563e-6■■■■■ 137.9
SF3B1O75533 CD55-202ENST00000343420 978 ntTSL 518.57■□□□□ 0.563e-6■■■■■ 137.9
SF3B1O75533 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.563e-6■■■■■ 137.9
SF3B1O75533 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.563e-6■■■■■ 137.9
SF3B1O75533 DTNBP1-207ENST00000510395 1404 ntTSL 218.54■□□□□ 0.568e-8■■■■■ 137.9
SF3B1O75533 ANXA6-212ENST00000521749 880 ntTSL 318.53■□□□□ 0.563e-6■■■■■ 137.9
SF3B1O75533 SERPINF1-204ENST00000571149 431 ntTSL 318.52■□□□□ 0.563e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1372 ms