Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM13O60858 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRIM13O60858 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM13O60858 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM13O60858 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 AC018553.1-201ENST00000616682 1458 ntBASIC19.22■□□□□ 0.67
TRIM13O60858 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.22■□□□□ 0.67
TRIM13O60858 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM13O60858 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM13O60858 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM13O60858 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM13O60858 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM13O60858 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.22■□□□□ 0.67
TRIM13O60858 AC011767.1-201ENST00000617410 1153 ntBASIC19.22■□□□□ 0.67
TRIM13O60858 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 AC010980.2-201ENST00000587099 1412 ntBASIC19.22■□□□□ 0.67
TRIM13O60858 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRIM13O60858 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.22■□□□□ 0.67
TRIM13O60858 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
TRIM13O60858 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC19.22■□□□□ 0.67
TRIM13O60858 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRIM13O60858 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.22■□□□□ 0.67
TRIM13O60858 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
TRIM13O60858 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM13O60858 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM13O60858 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
TRIM13O60858 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRIM13O60858 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM13O60858 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM13O60858 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM13O60858 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.21■□□□□ 0.67
TRIM13O60858 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM13O60858 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM13O60858 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM13O60858 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.21■□□□□ 0.67
TRIM13O60858 MIR6821-201ENST00000617625 74 ntBASIC19.21■□□□□ 0.67
TRIM13O60858 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.21■□□□□ 0.67
TRIM13O60858 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TRIM13O60858 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 CROCCP3-202ENST00000420820 1947 ntBASIC19.21■□□□□ 0.67
TRIM13O60858 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
TRIM13O60858 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.21■□□□□ 0.67
TRIM13O60858 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRIM13O60858 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM13O60858 AL161938.1-201ENST00000569833 2180 ntBASIC19.2■□□□□ 0.66
TRIM13O60858 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 AC116351.2-201ENST00000606540 1585 ntBASIC19.2■□□□□ 0.66
TRIM13O60858 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM13O60858 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM13O60858 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM13O60858 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM13O60858 OR10C1-204ENST00000622521 1039 ntBASIC19.2■□□□□ 0.66
TRIM13O60858 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM13O60858 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM13O60858 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.2■□□□□ 0.66
TRIM13O60858 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
TRIM13O60858 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM13O60858 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM13O60858 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TRIM13O60858 NEFHP1-201ENST00000412845 2629 ntBASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms