Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AC009237.14-201ENST00000609975 1594 ntBASIC25.58■■□□□ 1.69
RTF1Q92541 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC25.58■■□□□ 1.69
RTF1Q92541 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
RTF1Q92541 AC004980.1-204ENST00000429707 299 ntBASIC25.58■■□□□ 1.69
RTF1Q92541 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC25.58■■□□□ 1.69
RTF1Q92541 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC25.58■■□□□ 1.69
RTF1Q92541 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
RTF1Q92541 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC25.58■■□□□ 1.69
RTF1Q92541 HLA-A-209ENST00000638375 975 ntBASIC25.58■■□□□ 1.69
RTF1Q92541 FSCN1P1-201ENST00000568912 1481 ntBASIC25.58■■□□□ 1.69
RTF1Q92541 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
RTF1Q92541 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.58■■□□□ 1.68
RTF1Q92541 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
RTF1Q92541 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC25.58■■□□□ 1.68
RTF1Q92541 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
RTF1Q92541 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
RTF1Q92541 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC25.57■■□□□ 1.68
RTF1Q92541 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC25.57■■□□□ 1.68
RTF1Q92541 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC25.57■■□□□ 1.68
RTF1Q92541 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25.57■■□□□ 1.68
RTF1Q92541 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC25.57■■□□□ 1.68
RTF1Q92541 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC25.57■■□□□ 1.68
RTF1Q92541 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RTF1Q92541 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC25.56■■□□□ 1.68
RTF1Q92541 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RTF1Q92541 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
RTF1Q92541 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RTF1Q92541 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC25.56■■□□□ 1.68
RTF1Q92541 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RTF1Q92541 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
RTF1Q92541 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
RTF1Q92541 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
RTF1Q92541 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC25.56■■□□□ 1.68
RTF1Q92541 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RTF1Q92541 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC25.56■■□□□ 1.68
RTF1Q92541 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RTF1Q92541 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RTF1Q92541 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
RTF1Q92541 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC25.56■■□□□ 1.68
RTF1Q92541 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
RTF1Q92541 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC25.55■■□□□ 1.68
RTF1Q92541 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 MIR1238-201ENST00000408483 83 ntBASIC25.55■■□□□ 1.68
RTF1Q92541 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 MIR6786-201ENST00000616843 113 ntBASIC25.55■■□□□ 1.68
RTF1Q92541 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC25.55■■□□□ 1.68
RTF1Q92541 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC25.55■■□□□ 1.68
RTF1Q92541 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
RTF1Q92541 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
RTF1Q92541 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC25.55■■□□□ 1.68
RTF1Q92541 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC25.54■■□□□ 1.68
RTF1Q92541 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC25.54■■□□□ 1.68
RTF1Q92541 USP48-205ENST00000421625 2818 ntTSL 2 BASIC25.54■■□□□ 1.68
RTF1Q92541 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC25.54■■□□□ 1.68
RTF1Q92541 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC25.54■■□□□ 1.68
RTF1Q92541 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
RTF1Q92541 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC25.54■■□□□ 1.68
RTF1Q92541 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
RTF1Q92541 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
RTF1Q92541 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC25.53■■□□□ 1.68
RTF1Q92541 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 MESTP1-201ENST00000404287 994 ntBASIC25.53■■□□□ 1.68
RTF1Q92541 NME1-207ENST00000480143 964 ntTSL 2 BASIC25.53■■□□□ 1.68
RTF1Q92541 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
RTF1Q92541 GLDC-219ENST00000640208 420 ntTSL 2 BASIC25.53■■□□□ 1.68
RTF1Q92541 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC25.53■■□□□ 1.68
RTF1Q92541 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RTF1Q92541 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC25.53■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms