Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 AC068418.2-201ENST00000577309 3703 ntBASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.36■□□□□ 0.21
CCDC28AQ8IWP9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 AC010997.5-201ENST00000609182 354 ntBASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CCDC28AQ8IWP9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 AC079089.2-201ENST00000531211 1277 ntBASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC28AQ8IWP9 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.33■□□□□ 0.21
CCDC28AQ8IWP9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.33■□□□□ 0.21
CCDC28AQ8IWP9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC28AQ8IWP9 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC28AQ8IWP9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.21
CCDC28AQ8IWP9 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
CCDC28AQ8IWP9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC16.33■□□□□ 0.21
CCDC28AQ8IWP9 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC28AQ8IWP9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC28AQ8IWP9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms