Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.76■□□□□ 0.11
CX3CL1P78423 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC15.76■□□□□ 0.11
CX3CL1P78423 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
CX3CL1P78423 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC15.76■□□□□ 0.11
CX3CL1P78423 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CX3CL1P78423 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC15.76■□□□□ 0.11
CX3CL1P78423 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC15.76■□□□□ 0.11
CX3CL1P78423 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC15.76■□□□□ 0.11
CX3CL1P78423 OR2A1-AS1-207ENST00000486094 819 ntBASIC15.76■□□□□ 0.11
CX3CL1P78423 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC15.76■□□□□ 0.11
CX3CL1P78423 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC15.76■□□□□ 0.11
CX3CL1P78423 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
CX3CL1P78423 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
CX3CL1P78423 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
CX3CL1P78423 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 HCG11-201ENST00000411553 5696 ntBASIC15.75■□□□□ 0.11
CX3CL1P78423 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CX3CL1P78423 HES2-206ENST00000489730 730 ntTSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC15.75■□□□□ 0.11
CX3CL1P78423 SLC29A4P2-201ENST00000504749 1089 ntBASIC15.75■□□□□ 0.11
CX3CL1P78423 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC15.75■□□□□ 0.11
CX3CL1P78423 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC15.75■□□□□ 0.11
CX3CL1P78423 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CX3CL1P78423 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
CX3CL1P78423 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CX3CL1P78423 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC15.75■□□□□ 0.11
CX3CL1P78423 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 LBX2-AS1-202ENST00000603175 2083 ntBASIC15.74■□□□□ 0.11
CX3CL1P78423 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CX3CL1P78423 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC15.74■□□□□ 0.11
CX3CL1P78423 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC15.74■□□□□ 0.11
CX3CL1P78423 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
CX3CL1P78423 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CX3CL1P78423 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CX3CL1P78423 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC15.74■□□□□ 0.11
CX3CL1P78423 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC15.74■□□□□ 0.11
CX3CL1P78423 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC15.74■□□□□ 0.11
CX3CL1P78423 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC15.74■□□□□ 0.11
CX3CL1P78423 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC15.74■□□□□ 0.11
CX3CL1P78423 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.74■□□□□ 0.11
CX3CL1P78423 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CX3CL1P78423 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
CX3CL1P78423 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
CX3CL1P78423 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CX3CL1P78423 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC15.73■□□□□ 0.11
CX3CL1P78423 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC15.73■□□□□ 0.11
CX3CL1P78423 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.73■□□□□ 0.11
CX3CL1P78423 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 PHGDH-210ENST00000641115 1638 ntBASIC15.73■□□□□ 0.11
CX3CL1P78423 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.73■□□□□ 0.11
CX3CL1P78423 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC15.73■□□□□ 0.11
CX3CL1P78423 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CX3CL1P78423 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.73■□□□□ 0.11
CX3CL1P78423 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms