Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.66■□□□□ 0.58
SDC1P18827 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.66■□□□□ 0.58
SDC1P18827 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.66■□□□□ 0.58
SDC1P18827 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.66■□□□□ 0.58
SDC1P18827 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.66■□□□□ 0.58
SDC1P18827 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SDC1P18827 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.66■□□□□ 0.58
SDC1P18827 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.65■□□□□ 0.58
SDC1P18827 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.65■□□□□ 0.58
SDC1P18827 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
SDC1P18827 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SDC1P18827 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SDC1P18827 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.65■□□□□ 0.58
SDC1P18827 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.65■□□□□ 0.58
SDC1P18827 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.65■□□□□ 0.58
SDC1P18827 AC006557.6-201ENST00000623071 864 ntBASIC18.65■□□□□ 0.58
SDC1P18827 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 RNF165-205ENST00000588679 2904 ntBASIC18.65■□□□□ 0.58
SDC1P18827 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SDC1P18827 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.65■□□□□ 0.58
SDC1P18827 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.65■□□□□ 0.58
SDC1P18827 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.65■□□□□ 0.58
SDC1P18827 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SDC1P18827 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SDC1P18827 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SDC1P18827 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
SDC1P18827 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SDC1P18827 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SDC1P18827 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 SLC29A4P1-201ENST00000398760 971 ntBASIC18.64■□□□□ 0.57
SDC1P18827 NCF1B-203ENST00000435988 1254 ntBASIC18.64■□□□□ 0.57
SDC1P18827 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SDC1P18827 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.64■□□□□ 0.57
SDC1P18827 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
SDC1P18827 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.64■□□□□ 0.57
SDC1P18827 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SDC1P18827 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SDC1P18827 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.64■□□□□ 0.57
SDC1P18827 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SDC1P18827 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.64■□□□□ 0.57
SDC1P18827 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
SDC1P18827 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
SDC1P18827 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.63■□□□□ 0.57
SDC1P18827 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.63■□□□□ 0.57
SDC1P18827 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.63■□□□□ 0.57
SDC1P18827 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.63■□□□□ 0.57
SDC1P18827 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.63■□□□□ 0.57
SDC1P18827 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SDC1P18827 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.63■□□□□ 0.57
SDC1P18827 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.63■□□□□ 0.57
SDC1P18827 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SDC1P18827 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SDC1P18827 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.62■□□□□ 0.57
SDC1P18827 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC1P18827 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC1P18827 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC1P18827 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
SDC1P18827 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC1P18827 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.62■□□□□ 0.57
SDC1P18827 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC1P18827 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC1P18827 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SDC1P18827 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.62■□□□□ 0.57
SDC1P18827 MYC-209ENST00000641252 345 ntBASIC18.62■□□□□ 0.57
SDC1P18827 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.62■□□□□ 0.57
SDC1P18827 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
SDC1P18827 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC1P18827 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.62■□□□□ 0.57
SDC1P18827 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SDC1P18827 AC004408.2-201ENST00000623613 2777 ntBASIC18.62■□□□□ 0.57
SDC1P18827 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms