Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXN3O00409 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXN3O00409 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
FOXN3O00409 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
FOXN3O00409 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXN3O00409 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXN3O00409 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.97■□□□□ 0.95
FOXN3O00409 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
FOXN3O00409 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXN3O00409 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXN3O00409 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXN3O00409 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXN3O00409 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.97■□□□□ 0.95
FOXN3O00409 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXN3O00409 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.97■□□□□ 0.95
FOXN3O00409 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
FOXN3O00409 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
FOXN3O00409 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
FOXN3O00409 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.96■□□□□ 0.95
FOXN3O00409 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.96■□□□□ 0.95
FOXN3O00409 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.96■□□□□ 0.95
FOXN3O00409 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.96■□□□□ 0.95
FOXN3O00409 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXN3O00409 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
FOXN3O00409 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.95■□□□□ 0.95
FOXN3O00409 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
FOXN3O00409 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.95■□□□□ 0.94
FOXN3O00409 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
FOXN3O00409 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
FOXN3O00409 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.95■□□□□ 0.94
FOXN3O00409 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
FOXN3O00409 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.95■□□□□ 0.94
FOXN3O00409 UNC93B5-201ENST00000530315 699 ntBASIC20.95■□□□□ 0.94
FOXN3O00409 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.95■□□□□ 0.94
FOXN3O00409 AL121906.2-201ENST00000621597 723 ntBASIC20.95■□□□□ 0.94
FOXN3O00409 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.95■□□□□ 0.94
FOXN3O00409 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
FOXN3O00409 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.95■□□□□ 0.94
FOXN3O00409 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
FOXN3O00409 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
FOXN3O00409 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXN3O00409 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
FOXN3O00409 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXN3O00409 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXN3O00409 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXN3O00409 AP006587.1-201ENST00000534129 1502 ntBASIC20.94■□□□□ 0.94
FOXN3O00409 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
FOXN3O00409 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXN3O00409 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.94■□□□□ 0.94
FOXN3O00409 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
FOXN3O00409 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.94■□□□□ 0.94
FOXN3O00409 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.94■□□□□ 0.94
FOXN3O00409 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
FOXN3O00409 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms