Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 AC004817.4-201ENST00000602396 3625 ntBASIC5.07□□□□□ -1.6
VAPAQ9P0L0 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.07□□□□□ -1.6
VAPAQ9P0L0 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AL662874.1-201ENST00000426065 230 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AL450996.1-201ENST00000445574 1202 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 NOP56P2-201ENST00000447491 769 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC011476.1-201ENST00000466725 307 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 CBX1P5-201ENST00000475330 559 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AP002884.1-201ENST00000479691 655 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 RPL7P41-201ENST00000485823 957 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 RN7SL814P-201ENST00000487715 300 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 NIFKP7-201ENST00000503365 834 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC022360.1-201ENST00000521058 340 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 IGBP1P1-201ENST00000554337 1009 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AL118522.2-201ENST00000616045 615 ntBASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
VAPAQ9P0L0 AC003985.2-201ENST00000562268 1669 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 CASC19-248ENST00000641674 1356 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 CDY8P-201ENST00000428380 1279 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AC019185.1-201ENST00000442718 389 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 CDY20P-201ENST00000447528 1279 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 SEPT7P3-201ENST00000455017 621 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AC112184.1-201ENST00000505179 312 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 TBCA-207ENST00000520039 157 ntTSL 3 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AP004607.2-201ENST00000533949 322 ntBASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VAPAQ9P0L0 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VAPAQ9P0L0 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
VAPAQ9P0L0 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VAPAQ9P0L0 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
VAPAQ9P0L0 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms