RNA–Protein interactions for RNA: ENST00000434425.5

RFC3-202, Transcript of replication factor C subunit 3, humanhuman

TSL 5 BASIC

Gene RFC3, Length 1,461 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-202ENST00000434425 AEBP2Q6ZN18 517 aaPredicted RBP15.26■□□□□ 0.03
RFC3-202ENST00000434425 CHIC1Q5VXU3 224 aa14.86□□□□□ -0.03
RFC3-202ENST00000434425 POTEDQ86YR6 584 aa14.32□□□□□ -0.12
RFC3-202ENST00000434425 SENP3Q9H4L4 574 aaPredicted RBP13.37□□□□□ -0.27
RFC3-202ENST00000434425 PHF23Q9BUL5 403 aaPredicted RBP13.22□□□□□ -0.29
RFC3-202ENST00000434425 FOXD1Q16676 465 aa12.54□□□□□ -0.4
RFC3-202ENST00000434425 MSH5O43196 834 aa12.38□□□□□ -0.43
RFC3-202ENST00000434425 PLPPR3Q6T4P5 718 aa12.18□□□□□ -0.46
RFC3-202ENST00000434425 NISCHQ9Y2I1 1504 aa11.84□□□□□ -0.51
RFC3-202ENST00000434425 ADRA2BP18089 450 aa11.58□□□□□ -0.56
RFC3-202ENST00000434425 PPP6R1Q9UPN7 881 aa11.54□□□□□ -0.56
RFC3-202ENST00000434425 CACNB1Q02641 598 aaPredicted RBP11.43□□□□□ -0.58
RFC3-202ENST00000434425 PIAS4Q8N2W9 510 aaPredicted RBP11.43□□□□□ -0.58
RFC3-202ENST00000434425 SLC24A1O60721 1099 aa11.36□□□□□ -0.59
RFC3-202ENST00000434425 KCNA4P22459 653 aa11.12□□□□□ -0.63
RFC3-202ENST00000434425 POTEHQ6S545 545 aa10.98□□□□□ -0.65
RFC3-202ENST00000434425 ABCC9O60706 1549 aa10.9□□□□□ -0.66
RFC3-202ENST00000434425 PPP4R3CPQ6ZMV5 832 aa10.86□□□□□ -0.67
RFC3-202ENST00000434425 EHMT2Q96KQ7 1210 aa10.82□□□□□ -0.68
RFC3-202ENST00000434425 CCDC180Q9P1Z9 1646 aa10.64□□□□□ -0.71
RFC3-202ENST00000434425 SLC4A1APQ9BWU0 796 aaKnown RBP10.59□□□□□ -0.71
RFC3-202ENST00000434425 NCBP3Q53F19 620 aaKnown RBP10.56□□□□□ -0.72
RFC3-202ENST00000434425 NPM3O75607 178 aaKnown RBP10.55□□□□□ -0.72
RFC3-202ENST00000434425 CSRNP3Q8WYN3 585 aa10.52□□□□□ -0.73
RFC3-202ENST00000434425 DNAJC5BQ9UF47 199 aa10.46□□□□□ -0.74
RFC3-202ENST00000434425 DAXXQ9UER7 740 aaPredicted RBP10.42□□□□□ -0.74
RFC3-202ENST00000434425 CNKSR2Q8WXI2 1034 aa10.4□□□□□ -0.74
RFC3-202ENST00000434425 MAPK8IP2Q13387 824 aaPredicted RBP10.37□□□□□ -0.75
RFC3-202ENST00000434425 RNF39Q9H2S5 420 aa10.36□□□□□ -0.75
RFC3-202ENST00000434425 DMRT2Q9Y5R5 561 aa10.36□□□□□ -0.75
RFC3-202ENST00000434425 SCAF1Q9H7N4 1312 aaKnown RBP10.34□□□□□ -0.75
RFC3-202ENST00000434425 ZBTB22O15209 634 aa10.29□□□□□ -0.76
RFC3-202ENST00000434425 RB1CC1Q8TDY2 1594 aa10.24□□□□□ -0.77
RFC3-202ENST00000434425 C1QBPQ07021 282 aaKnown RBP10.19□□□□□ -0.78
RFC3-202ENST00000434425 TTBK1Q5TCY1 1321 aaPredicted RBP10.18□□□□□ -0.78
RFC3-202ENST00000434425 DCAF8L2P0C7V8 631 aa10.17□□□□□ -0.78
RFC3-202ENST00000434425 PABPN1Q86U42 306 aaKnown RBP eCLIP10.17□□□□□ -0.78
RFC3-202ENST00000434425 NACADO15069 1562 aa10.13□□□□□ -0.79
RFC3-202ENST00000434425 MYT1Q01538 1121 aa10.1□□□□□ -0.79
RFC3-202ENST00000434425 RNF216Q9NWF9 866 aaPredicted RBP10.1□□□□□ -0.79
RFC3-202ENST00000434425 RTN4Q9NQC3 1192 aaKnown RBP10.07□□□□□ -0.8
RFC3-202ENST00000434425 UNC13AQ9UPW8 1703 aa10.06□□□□□ -0.8
RFC3-202ENST00000434425 FOXD4L1Q9NU39 408 aa10.03□□□□□ -0.8
RFC3-202ENST00000434425 DCAF8L1A6NGE4 600 aa10.01□□□□□ -0.81
RFC3-202ENST00000434425 APLP2Q06481 763 aa9.99□□□□□ -0.81
RFC3-202ENST00000434425 AMER1Q5JTC6 1135 aaPredicted RBP9.99□□□□□ -0.81
RFC3-202ENST00000434425 BICRAQ9NZM4 1560 aa9.99□□□□□ -0.81
RFC3-202ENST00000434425 HOXD11P31277 338 aaPredicted RBP9.98□□□□□ -0.81
RFC3-202ENST00000434425 PELP1Q8IZL8 1130 aaKnown RBP9.95□□□□□ -0.82
RFC3-202ENST00000434425 MYO15BQ96JP2 1530 aa9.91□□□□□ -0.82
RFC3-202ENST00000434425 SLC4A2P04920 1241 aa9.91□□□□□ -0.82
RFC3-202ENST00000434425 ARXQ96QS3 562 aa9.84□□□□□ -0.83
RFC3-202ENST00000434425 CC2D2AQ9P2K1 1620 aa9.82□□□□□ -0.84
RFC3-202ENST00000434425 CECR2Q9BXF3 1484 aa9.82□□□□□ -0.84
RFC3-202ENST00000434425 ERICH6Q7L0X2 663 aa9.81□□□□□ -0.84
RFC3-202ENST00000434425 PRKCSHP14314 528 aaPredicted RBP9.77□□□□□ -0.85
RFC3-202ENST00000434425 ZCCHC6Q5VYS8 1495 aaKnown RBP9.74□□□□□ -0.85
RFC3-202ENST00000434425 EIF4G1Q04637 1599 aaKnown RBP9.74□□□□□ -0.85
RFC3-202ENST00000434425 SCRIBQ14160 1630 aa9.74□□□□□ -0.85
RFC3-202ENST00000434425 SHROOM4Q9ULL8 1493 aa9.74□□□□□ -0.85
RFC3-202ENST00000434425 DCAF1Q9Y4B6 1507 aa9.73□□□□□ -0.85
RFC3-202ENST00000434425 DNAJC5Q9H3Z4 198 aa9.69□□□□□ -0.86
RFC3-202ENST00000434425 MYCNP04198 464 aaPredicted RBP9.66□□□□□ -0.86
RFC3-202ENST00000434425 SP7Q8TDD2 431 aaPredicted RBP9.66□□□□□ -0.86
RFC3-202ENST00000434425 PLSCR2Q9NRY7 297 aa9.64□□□□□ -0.87
RFC3-202ENST00000434425 ATXN8OSP0DMR3 200 aa9.57□□□□□ -0.88
RFC3-202ENST00000434425 TIMELESSQ9UNS1 1208 aa9.56□□□□□ -0.88
RFC3-202ENST00000434425 ATF5Q9Y2D1 282 aaPredicted RBP9.53□□□□□ -0.88
RFC3-202ENST00000434425 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.49□□□□□ -0.898e-7■■■□□ 16.1
RFC3-202ENST00000434425 RANGAP1P46060 587 aaPredicted RBP9.47□□□□□ -0.89
RFC3-202ENST00000434425 HOMEZQ8IX15 550 aa9.46□□□□□ -0.9
RFC3-202ENST00000434425 FKBP8Q14318 412 aa9.44□□□□□ -0.9
RFC3-202ENST00000434425 U3KPZ7 1027 aaPredicted RBP9.44□□□□□ -0.9
RFC3-202ENST00000434425 TAOK2Q9UL54 1235 aa9.43□□□□□ -0.9
RFC3-202ENST00000434425 CUX2O14529 1486 aa9.41□□□□□ -0.9
RFC3-202ENST00000434425 ERCC6Q03468 1493 aa9.39□□□□□ -0.91
RFC3-202ENST00000434425 NCAPD3P42695 1498 aa9.38□□□□□ -0.91
RFC3-202ENST00000434425 TULP1O00294 542 aaPredicted RBP9.36□□□□□ -0.91
RFC3-202ENST00000434425 BCANQ96GW7 911 aa9.34□□□□□ -0.91
RFC3-202ENST00000434425 ATAD2BQ9ULI0 1458 aa9.33□□□□□ -0.92
RFC3-202ENST00000434425 NESP48681 1621 aa9.33□□□□□ -0.92
RFC3-202ENST00000434425 SAMD1Q6SPF0 538 aaPredicted RBP9.32□□□□□ -0.92
RFC3-202ENST00000434425 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.29□□□□□ -0.92
RFC3-202ENST00000434425 HNRNPUL2Q1KMD3 747 aaKnown RBP9.29□□□□□ -0.92
RFC3-202ENST00000434425 SMARCA2P51531 1590 aa9.26□□□□□ -0.93
RFC3-202ENST00000434425 SMARCA4P51532 1647 aa9.26□□□□□ -0.93
RFC3-202ENST00000434425 HMGXB3Q12766 1538 aa9.25□□□□□ -0.93
RFC3-202ENST00000434425 DSG3P32926 999 aa9.23□□□□□ -0.93
RFC3-202ENST00000434425 EIF5BO60841 1220 aaKnown RBP9.22□□□□□ -0.93
RFC3-202ENST00000434425 CHRDL2Q6WN34 429 aa9.22□□□□□ -0.93
RFC3-202ENST00000434425 KLHL34Q8N239 644 aa9.21□□□□□ -0.93
RFC3-202ENST00000434425 ZNF219Q9P2Y4 722 aaPredicted RBP9.21□□□□□ -0.93
RFC3-202ENST00000434425 BAZ1BQ9UIG0 1483 aaKnown RBP9.21□□□□□ -0.93
RFC3-202ENST00000434425 THOC2Q8NI27 1593 aaKnown RBP9.21□□□□□ -0.94
RFC3-202ENST00000434425 TRIM41Q8WV44 630 aa9.21□□□□□ -0.94
RFC3-202ENST00000434425 TPRNQ4KMQ1 711 aa9.19□□□□□ -0.94
RFC3-202ENST00000434425 BAZ1AQ9NRL2 1556 aaPredicted RBP9.17□□□□□ -0.94
RFC3-202ENST00000434425 LAMC3Q9Y6N6 1575 aa9.17□□□□□ -0.94
RFC3-202ENST00000434425 KIF21AQ7Z4S6 1674 aa9.17□□□□□ -0.94
RFC3-202ENST00000434425 PODXL2Q9NZ53 605 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 172.4 ms