RNA–Protein interactions for RNA: ENST00000545354.1

UBE4A-203, Transcript of ubiquitination factor E4A, humanhuman

TSL 2 BASIC

Gene UBE4A, Length 2,149 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4A-203ENST00000545354 AEBP2Q6ZN18 517 aaPredicted RBP13.31□□□□□ -0.28
UBE4A-203ENST00000545354 CHIC1Q5VXU3 224 aa12.84□□□□□ -0.35
UBE4A-203ENST00000545354 SENP3Q9H4L4 574 aaPredicted RBP11.31□□□□□ -0.6
UBE4A-203ENST00000545354 PHF23Q9BUL5 403 aaPredicted RBP11.29□□□□□ -0.6
UBE4A-203ENST00000545354 FOXD1Q16676 465 aa10.52□□□□□ -0.72
UBE4A-203ENST00000545354 PLPPR3Q6T4P5 718 aa10.34□□□□□ -0.75
UBE4A-203ENST00000545354 PPP6R1Q9UPN7 881 aa10.01□□□□□ -0.81
UBE4A-203ENST00000545354 ADRA2BP18089 450 aa9.98□□□□□ -0.81
UBE4A-203ENST00000545354 PIAS4Q8N2W9 510 aaPredicted RBP9.86□□□□□ -0.83
UBE4A-203ENST00000545354 MYT1Q01538 1121 aa9.77□□□□□ -0.85
UBE4A-203ENST00000545354 MSH5O43196 834 aa9.76□□□□□ -0.85
UBE4A-203ENST00000545354 PELP1Q8IZL8 1130 aaKnown RBP9.63□□□□□ -0.87
UBE4A-203ENST00000545354 TTBK1Q5TCY1 1321 aaPredicted RBP9.55□□□□□ -0.88
UBE4A-203ENST00000545354 SLC24A1O60721 1099 aa9.4□□□□□ -0.9
UBE4A-203ENST00000545354 POTEDQ86YR6 584 aa9.17□□□□□ -0.94
UBE4A-203ENST00000545354 SCAF1Q9H7N4 1312 aaKnown RBP9.13□□□□□ -0.95
UBE4A-203ENST00000545354 MAPK8IP2Q13387 824 aaPredicted RBP9.11□□□□□ -0.95
UBE4A-203ENST00000545354 PPP4R3CPQ6ZMV5 832 aa9.1□□□□□ -0.95
UBE4A-203ENST00000545354 ERICH6Q7L0X2 663 aa9.07□□□□□ -0.96
UBE4A-203ENST00000545354 DMRT2Q9Y5R5 561 aa9.01□□□□□ -0.97
UBE4A-203ENST00000545354 DAXXQ9UER7 740 aaPredicted RBP8.91□□□□□ -0.98
UBE4A-203ENST00000545354 CNKSR2Q8WXI2 1034 aa8.88□□□□□ -0.99
UBE4A-203ENST00000545354 APLP2Q06481 763 aa8.85□□□□□ -0.99
UBE4A-203ENST00000545354 NCBP3Q53F19 620 aaKnown RBP8.8□□□□□ -1
UBE4A-203ENST00000545354 HOXD11P31277 338 aaPredicted RBP8.77□□□□□ -1.01
UBE4A-203ENST00000545354 RNF216Q9NWF9 866 aaPredicted RBP8.75□□□□□ -1.01
UBE4A-203ENST00000545354 PRKCSHP14314 528 aaPredicted RBP8.71□□□□□ -1.01
UBE4A-203ENST00000545354 KCNA4P22459 653 aa8.7□□□□□ -1.02
UBE4A-203ENST00000545354 NPM3O75607 178 aaKnown RBP8.68□□□□□ -1.02
UBE4A-203ENST00000545354 DCAF8L1A6NGE4 600 aa8.58□□□□□ -1.04
UBE4A-203ENST00000545354 DNAJC5BQ9UF47 199 aa8.5□□□□□ -1.05
UBE4A-203ENST00000545354 RNF39Q9H2S5 420 aa8.36□□□□□ -1.07
UBE4A-203ENST00000545354 EIF5BO60841 1220 aaKnown RBP8.35□□□□□ -1.07
UBE4A-203ENST00000545354 RANGAP1P46060 587 aaPredicted RBP8.33□□□□□ -1.08
UBE4A-203ENST00000545354 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.32□□□□□ -1.084e-7■■■□□ 17.9
UBE4A-203ENST00000545354 ARXQ96QS3 562 aa8.31□□□□□ -1.08
UBE4A-203ENST00000545354 BCL11AQ9H165 835 aa8.28□□□□□ -1.08
UBE4A-203ENST00000545354 SLC4A2P04920 1241 aa8.26□□□□□ -1.09
UBE4A-203ENST00000545354 C1QBPQ07021 282 aaKnown RBP8.25□□□□□ -1.09
UBE4A-203ENST00000545354 SLC4A1APQ9BWU0 796 aaKnown RBP8.24□□□□□ -1.09
UBE4A-203ENST00000545354 CACNB1Q02641 598 aaPredicted RBP8.23□□□□□ -1.09
UBE4A-203ENST00000545354 U3KPZ7 1027 aaPredicted RBP8.18□□□□□ -1.1
UBE4A-203ENST00000545354 CENPBP07199 599 aaPredicted RBP8.11□□□□□ -1.11
UBE4A-203ENST00000545354 AMER1Q5JTC6 1135 aaPredicted RBP8.07□□□□□ -1.12
UBE4A-203ENST00000545354 EHMT2Q96KQ7 1210 aa8.05□□□□□ -1.12
UBE4A-203ENST00000545354 FOXD4L1Q9NU39 408 aa8.05□□□□□ -1.12
UBE4A-203ENST00000545354 RTN4Q9NQC3 1192 aaKnown RBP8.03□□□□□ -1.12
UBE4A-203ENST00000545354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.02□□□□□ -1.13
UBE4A-203ENST00000545354 MYCNP04198 464 aaPredicted RBP8.02□□□□□ -1.13
UBE4A-203ENST00000545354 HNRNPUL2Q1KMD3 747 aaKnown RBP8.02□□□□□ -1.13
UBE4A-203ENST00000545354 FAM9AQ8IZU1 332 aaPredicted RBP8.02□□□□□ -1.13
UBE4A-203ENST00000545354 ZBTB22O15209 634 aa8.01□□□□□ -1.13
UBE4A-203ENST00000545354 HOMEZQ8IX15 550 aa8□□□□□ -1.13
UBE4A-203ENST00000545354 SPINK5Q9NQ38 1064 aaPredicted RBP8□□□□□ -1.13
UBE4A-203ENST00000545354 HRCP23327 699 aa8□□□□□ -1.13
UBE4A-203ENST00000545354 SAMD1Q6SPF0 538 aaPredicted RBP7.99□□□□□ -1.13
UBE4A-203ENST00000545354 CAPN15O75808 1086 aa7.96□□□□□ -1.14
UBE4A-203ENST00000545354 UBE2Q2Q8WVN8 375 aa7.94□□□□□ -1.14
UBE4A-203ENST00000545354 NISCHQ9Y2I1 1504 aa7.89□□□□□ -1.15
UBE4A-203ENST00000545354 DSG3P32926 999 aa7.89□□□□□ -1.15
UBE4A-203ENST00000545354 TRHP20396 242 aaPredicted RBP7.88□□□□□ -1.15
UBE4A-203ENST00000545354 ZNF219Q9P2Y4 722 aaPredicted RBP7.88□□□□□ -1.15
UBE4A-203ENST00000545354 PODXL2Q9NZ53 605 aa7.88□□□□□ -1.15
UBE4A-203ENST00000545354 TIMELESSQ9UNS1 1208 aa7.85□□□□□ -1.15
UBE4A-203ENST00000545354 CSRNP3Q8WYN3 585 aa7.84□□□□□ -1.16
UBE4A-203ENST00000545354 ATF5Q9Y2D1 282 aaPredicted RBP7.83□□□□□ -1.16
UBE4A-203ENST00000545354 NEFLP07196 543 aa7.82□□□□□ -1.16
UBE4A-203ENST00000545354 ATXN8OSP0DMR3 200 aa7.81□□□□□ -1.16
UBE4A-203ENST00000545354 ABCB7O75027 752 aa7.79□□□□□ -1.16
UBE4A-203ENST00000545354 ANP32EQ9BTT0 268 aa7.79□□□□□ -1.16
UBE4A-203ENST00000545354 KLHL34Q8N239 644 aa7.77□□□□□ -1.17
UBE4A-203ENST00000545354 TULP1O00294 542 aaPredicted RBP7.76□□□□□ -1.17
UBE4A-203ENST00000545354 PLEKHG5O94827 1062 aa7.76□□□□□ -1.17
UBE4A-203ENST00000545354 DCAF8L2P0C7V8 631 aa7.75□□□□□ -1.17
UBE4A-203ENST00000545354 POLA2Q14181 598 aa7.74□□□□□ -1.17
UBE4A-203ENST00000545354 PDIA4P13667 645 aaKnown RBP7.7□□□□□ -1.18
UBE4A-203ENST00000545354 PKNOX2Q96KN3 472 aa7.7□□□□□ -1.18
UBE4A-203ENST00000545354 MYT1LQ9UL68 1186 aa7.7□□□□□ -1.18
UBE4A-203ENST00000545354 FBXO3Q9UK99 471 aa7.7□□□□□ -1.18
UBE4A-203ENST00000545354 ERICH6BQ5W0A0 696 aa7.69□□□□□ -1.18
UBE4A-203ENST00000545354 NPM2Q86SE8 214 aaKnown RBP7.69□□□□□ -1.18
UBE4A-203ENST00000545354 TAOK2Q9UL54 1235 aa7.67□□□□□ -1.18
UBE4A-203ENST00000545354 BCANQ96GW7 911 aa7.67□□□□□ -1.18
UBE4A-203ENST00000545354 CDK11AQ9UQ88 783 aaPredicted RBP7.64□□□□□ -1.19
UBE4A-203ENST00000545354 PDE4CQ08493 712 aa7.63□□□□□ -1.19
UBE4A-203ENST00000545354 TAF7LQ5H9L4 462 aa7.62□□□□□ -1.19
UBE4A-203ENST00000545354 ACIN1Q9UKV3 1341 aaKnown RBP7.62□□□□□ -1.19
UBE4A-203ENST00000545354 ZEB1P37275 1124 aaPredicted RBP7.61□□□□□ -1.19
UBE4A-203ENST00000545354 ABCC9O60706 1549 aa7.59□□□□□ -1.19
UBE4A-203ENST00000545354 ZNF326Q5BKZ1 582 aaKnown RBP7.59□□□□□ -1.19
UBE4A-203ENST00000545354 ZBTB12Q9Y330 459 aaPredicted RBP7.59□□□□□ -1.19
UBE4A-203ENST00000545354 GLIPR1L2Q4G1C9 344 aa7.57□□□□□ -1.2
UBE4A-203ENST00000545354 C14orf37Q86TY3 774 aa7.57□□□□□ -1.2
UBE4A-203ENST00000545354 GTF3C3Q9Y5Q9 886 aa7.55□□□□□ -1.2
UBE4A-203ENST00000545354 BRD2P25440 801 aaKnown RBP7.53□□□□□ -1.2
UBE4A-203ENST00000545354 HMGB1P09429 215 aaKnown RBP7.51□□□□□ -1.21
UBE4A-203ENST00000545354 TPRNQ4KMQ1 711 aa7.51□□□□□ -1.21
UBE4A-203ENST00000545354 RBM42Q9BTD8 480 aaKnown RBP7.51□□□□□ -1.21
UBE4A-203ENST00000545354 CLSPNQ9HAW4 1339 aa7.51□□□□□ -1.21
UBE4A-203ENST00000545354 ANO8Q9HCE9 1232 aaPredicted RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms