RNA–Protein interactions for RNA: ENST00000412272.6

HERC4-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-205ENST00000412272 PELP1Q8IZL8 1130 aaKnown RBP9.64□□□□□ -0.87
HERC4-205ENST00000412272 MYT1Q01538 1121 aa9.51□□□□□ -0.89
HERC4-205ENST00000412272 TTBK1Q5TCY1 1321 aaPredicted RBP9.25□□□□□ -0.93
HERC4-205ENST00000412272 PRKCSHP14314 528 aaPredicted RBP9.2□□□□□ -0.94
HERC4-205ENST00000412272 SLC24A1O60721 1099 aa9.07□□□□□ -0.96
HERC4-205ENST00000412272 APLP2Q06481 763 aa9□□□□□ -0.97
HERC4-205ENST00000412272 ERICH6Q7L0X2 663 aa8.87□□□□□ -0.99
HERC4-205ENST00000412272 BCL11AQ9H165 835 aa8.81□□□□□ -1
HERC4-205ENST00000412272 HRCP23327 699 aa8.74□□□□□ -1.01
HERC4-205ENST00000412272 SCAF1Q9H7N4 1312 aaKnown RBP8.73□□□□□ -1.01
HERC4-205ENST00000412272 NISCHQ9Y2I1 1504 aa8.73□□□□□ -1.01
HERC4-205ENST00000412272 FAM9AQ8IZU1 332 aaPredicted RBP8.73□□□□□ -1.01
HERC4-205ENST00000412272 DAXXQ9UER7 740 aaPredicted RBP8.64□□□□□ -1.03
HERC4-205ENST00000412272 PPARGC1BQ86YN6 1023 aaKnown RBP8.47□□□□□ -1.05
HERC4-205ENST00000412272 EIF5BO60841 1220 aaKnown RBP8.39□□□□□ -1.07
HERC4-205ENST00000412272 CENPBP07199 599 aaPredicted RBP8.36□□□□□ -1.07
HERC4-205ENST00000412272 PLEKHG5O94827 1062 aa8.29□□□□□ -1.08
HERC4-205ENST00000412272 ANP32EQ9BTT0 268 aa8.23□□□□□ -1.09
HERC4-205ENST00000412272 ACIN1Q9UKV3 1341 aaKnown RBP8.23□□□□□ -1.09
HERC4-205ENST00000412272 UBE2Q2Q8WVN8 375 aa8.21□□□□□ -1.09
HERC4-205ENST00000412272 CCDC180Q9P1Z9 1646 aa8.19□□□□□ -1.1
HERC4-205ENST00000412272 DCAF1Q9Y4B6 1507 aa8.18□□□□□ -1.1
HERC4-205ENST00000412272 CSRNP3Q8WYN3 585 aa8.18□□□□□ -1.1
HERC4-205ENST00000412272 NEUROD1Q13562 356 aa8.16□□□□□ -1.1
HERC4-205ENST00000412272 GTF3C3Q9Y5Q9 886 aa8.16□□□□□ -1.1
HERC4-205ENST00000412272 ANO8Q9HCE9 1232 aaPredicted RBP8.15□□□□□ -1.1
HERC4-205ENST00000412272 MYO15BQ96JP2 1530 aa8.14□□□□□ -1.11
HERC4-205ENST00000412272 PODXL2Q9NZ53 605 aa8.08□□□□□ -1.12
HERC4-205ENST00000412272 ZEB1P37275 1124 aaPredicted RBP8.04□□□□□ -1.12
HERC4-205ENST00000412272 PCGF6Q9BYE7 350 aa8.04□□□□□ -1.12
HERC4-205ENST00000412272 NCBP3Q53F19 620 aaKnown RBP8.01□□□□□ -1.13
HERC4-205ENST00000412272 PKNOX2Q96KN3 472 aa8□□□□□ -1.13
HERC4-205ENST00000412272 SALL2Q9Y467 1007 aaPredicted RBP7.94□□□□□ -1.14
HERC4-205ENST00000412272 KLHL34Q8N239 644 aa7.92□□□□□ -1.14
HERC4-205ENST00000412272 TRIM26Q12899 539 aaPredicted RBP7.88□□□□□ -1.15
HERC4-205ENST00000412272 CCDC136Q96JN2 1154 aa7.88□□□□□ -1.15
HERC4-205ENST00000412272 ARXQ96QS3 562 aa7.86□□□□□ -1.15
HERC4-205ENST00000412272 AEBP2Q6ZN18 517 aaPredicted RBP7.84□□□□□ -1.15
HERC4-205ENST00000412272 TSHZ2Q9NRE2 1034 aa7.83□□□□□ -1.16
HERC4-205ENST00000412272 PDIA4P13667 645 aaKnown RBP7.8□□□□□ -1.16
HERC4-205ENST00000412272 CHIC1Q5VXU3 224 aa7.8□□□□□ -1.16
HERC4-205ENST00000412272 ERICH6BQ5W0A0 696 aa7.8□□□□□ -1.16
HERC4-205ENST00000412272 TIMELESSQ9UNS1 1208 aa7.78□□□□□ -1.16
HERC4-205ENST00000412272 PDE4CQ08493 712 aa7.77□□□□□ -1.17
HERC4-205ENST00000412272 PLPPR3Q6T4P5 718 aa7.76□□□□□ -1.17
HERC4-205ENST00000412272 NEFLP07196 543 aa7.75□□□□□ -1.17
HERC4-205ENST00000412272 RANGAP1P46060 587 aaPredicted RBP7.75□□□□□ -1.17
HERC4-205ENST00000412272 CLSPNQ9HAW4 1339 aa7.73□□□□□ -1.17
HERC4-205ENST00000412272 FGD1P98174 961 aa7.72□□□□□ -1.17
HERC4-205ENST00000412272 RTN4Q9NQC3 1192 aaKnown RBP7.71□□□□□ -1.18
HERC4-205ENST00000412272 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.69□□□□□ -1.18
HERC4-205ENST00000412272 BCL11BQ9C0K0 894 aaPredicted RBP7.68□□□□□ -1.18
HERC4-205ENST00000412272 DEKP35659 375 aaKnown RBP7.64□□□□□ -1.19
HERC4-205ENST00000412272 MYT1LQ9UL68 1186 aa7.64□□□□□ -1.19
HERC4-205ENST00000412272 AAMPQ13685 434 aa7.64□□□□□ -1.19
HERC4-205ENST00000412272 SUPT16HQ9Y5B9 1047 aaKnown RBP7.61□□□□□ -1.19
HERC4-205ENST00000412272 MSH5O43196 834 aa7.61□□□□□ -1.19
HERC4-205ENST00000412272 ZMYND15Q9H091 742 aa7.6□□□□□ -1.19
HERC4-205ENST00000412272 A0A0U1RQG5 324 aaPredicted RBP7.6□□□□□ -1.19
HERC4-205ENST00000412272 TAF7LQ5H9L4 462 aa7.6□□□□□ -1.19
HERC4-205ENST00000412272 DIEXFQ68CQ4 756 aaKnown RBP7.59□□□□□ -1.19
HERC4-205ENST00000412272 TRIM41Q8WV44 630 aa7.58□□□□□ -1.2
HERC4-205ENST00000412272 RBM10P98175 930 aaKnown RBP7.57□□□□□ -1.2
HERC4-205ENST00000412272 ZCCHC6Q5VYS8 1495 aaKnown RBP7.55□□□□□ -1.2
HERC4-205ENST00000412272 TULP1O00294 542 aaPredicted RBP7.55□□□□□ -1.2
HERC4-205ENST00000412272 RSPH6AQ9H0K4 717 aa7.54□□□□□ -1.2
HERC4-205ENST00000412272 IL27Q8NEV9 243 aa7.54□□□□□ -1.2
HERC4-205ENST00000412272 HOMEZQ8IX15 550 aa7.53□□□□□ -1.2
HERC4-205ENST00000412272 RBM19Q9Y4C8 960 aaKnown RBP7.53□□□□□ -1.2
HERC4-205ENST00000412272 SUPT5HO00267 1087 aaKnown RBP7.5□□□□□ -1.21
HERC4-205ENST00000412272 CHMP4AQ9BY43 222 aa7.5□□□□□ -1.21
HERC4-205ENST00000412272 DHX37Q8IY37 1157 aaKnown RBP7.49□□□□□ -1.21
HERC4-205ENST00000412272 YTHDC1Q96MU7 727 aaKnown RBP7.48□□□□□ -1.21
HERC4-205ENST00000412272 VSIG10Q8N0Z9 540 aa7.47□□□□□ -1.21
HERC4-205ENST00000412272 EHMT2Q96KQ7 1210 aa7.47□□□□□ -1.21
HERC4-205ENST00000412272 LOC105371045A0A1W2PR82 267 aa7.47□□□□□ -1.21
HERC4-205ENST00000412272 GLIPR1L2Q4G1C9 344 aa7.46□□□□□ -1.21
HERC4-205ENST00000412272 RSPH4AQ5TD94 716 aa7.46□□□□□ -1.21
HERC4-205ENST00000412272 SAMD1Q6SPF0 538 aaPredicted RBP7.46□□□□□ -1.22
HERC4-205ENST00000412272 PAXIP1Q6ZW49 1069 aaPredicted RBP7.45□□□□□ -1.22
HERC4-205ENST00000412272 BRD2P25440 801 aaKnown RBP7.44□□□□□ -1.22
HERC4-205ENST00000412272 FANCIQ9NVI1 1328 aa7.44□□□□□ -1.22
HERC4-205ENST00000412272 NPM2Q86SE8 214 aaKnown RBP7.41□□□□□ -1.22
HERC4-205ENST00000412272 ZNF316A6NFI3 1004 aaPredicted RBP7.41□□□□□ -1.22
HERC4-205ENST00000412272 SHROOM4Q9ULL8 1493 aa7.41□□□□□ -1.22
HERC4-205ENST00000412272 HAP1P54257 671 aaPredicted RBP7.37□□□□□ -1.23
HERC4-205ENST00000412272 WRNQ14191 1432 aaPredicted RBP eCLIP7.36□□□□□ -1.231e-6■■■■■ 58.5
HERC4-205ENST00000412272 NAP1L2Q9ULW6 460 aaPredicted RBP7.34□□□□□ -1.23
HERC4-205ENST00000412272 MIER1Q8N108 512 aa7.34□□□□□ -1.23
HERC4-205ENST00000412272 C11orf95C9JLR9 678 aaPredicted RBP7.33□□□□□ -1.24
HERC4-205ENST00000412272 NAP1L5Q96NT1 182 aaPredicted RBP7.33□□□□□ -1.24
HERC4-205ENST00000412272 C14orf37Q86TY3 774 aa7.32□□□□□ -1.24
HERC4-205ENST00000412272 CNKSR2Q8WXI2 1034 aa7.32□□□□□ -1.24
HERC4-205ENST00000412272 ZNF326Q5BKZ1 582 aaKnown RBP7.31□□□□□ -1.24
HERC4-205ENST00000412272 TAOK2Q9UL54 1235 aa7.3□□□□□ -1.24
HERC4-205ENST00000412272 AMER1Q5JTC6 1135 aaPredicted RBP7.3□□□□□ -1.24
HERC4-205ENST00000412272 CCER1Q8TC90 406 aaPredicted RBP7.29□□□□□ -1.24
HERC4-205ENST00000412272 CHMP4BQ9H444 224 aaKnown RBP7.28□□□□□ -1.24
HERC4-205ENST00000412272 ABCC9O60706 1549 aa7.28□□□□□ -1.24
HERC4-205ENST00000412272 GTF2E1P29083 439 aaPredicted RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms