RNA–Protein interactions for RNA: ENST00000540805.5

PROM1-220, Transcript of prominin 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PROM1, Length 3,908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-220ENST00000540805 NISCHQ9Y2I1 1504 aa11□□□□□ -0.65
PROM1-220ENST00000540805 CCDC180Q9P1Z9 1646 aa9.55□□□□□ -0.88
PROM1-220ENST00000540805 DCAF8L2P0C7V8 631 aa9.31□□□□□ -0.92
PROM1-220ENST00000540805 ZCCHC6Q5VYS8 1495 aaKnown RBP9.31□□□□□ -0.92
PROM1-220ENST00000540805 DCAF1Q9Y4B6 1507 aa9.12□□□□□ -0.95
PROM1-220ENST00000540805 ABCC9O60706 1549 aa9.09□□□□□ -0.95
PROM1-220ENST00000540805 DNAJC5BQ9UF47 199 aa8.96□□□□□ -0.98
PROM1-220ENST00000540805 SHROOM4Q9ULL8 1493 aa8.96□□□□□ -0.98
PROM1-220ENST00000540805 MYO15BQ96JP2 1530 aa8.95□□□□□ -0.98
PROM1-220ENST00000540805 PPARGC1BQ86YN6 1023 aaKnown RBP8.83□□□□□ -1
PROM1-220ENST00000540805 NACADO15069 1562 aa8.79□□□□□ -1
PROM1-220ENST00000540805 SCRIBQ14160 1630 aa8.76□□□□□ -1.01
PROM1-220ENST00000540805 RB1CC1Q8TDY2 1594 aa8.71□□□□□ -1.01
PROM1-220ENST00000540805 UNC13AQ9UPW8 1703 aa8.71□□□□□ -1.01
PROM1-220ENST00000540805 HRCP23327 699 aa8.68□□□□□ -1.02
PROM1-220ENST00000540805 DNAJC5Q9H3Z4 198 aa8.62□□□□□ -1.03
PROM1-220ENST00000540805 SUPT5HO00267 1087 aaKnown RBP8.61□□□□□ -1.03
PROM1-220ENST00000540805 RSF1Q96T23 1441 aaPredicted RBP8.59□□□□□ -1.03
PROM1-220ENST00000540805 BICRAQ9NZM4 1560 aa8.58□□□□□ -1.04
PROM1-220ENST00000540805 CECR2Q9BXF3 1484 aa8.57□□□□□ -1.04
PROM1-220ENST00000540805 PCGF6Q9BYE7 350 aa8.57□□□□□ -1.04
PROM1-220ENST00000540805 MROH2BQ7Z745 1585 aa8.54□□□□□ -1.04
PROM1-220ENST00000540805 SCAF1Q9H7N4 1312 aaKnown RBP8.52□□□□□ -1.04
PROM1-220ENST00000540805 PELP1Q8IZL8 1130 aaKnown RBP8.51□□□□□ -1.05
PROM1-220ENST00000540805 WIZO95785 1651 aa8.5□□□□□ -1.05
PROM1-220ENST00000540805 EHMT2Q96KQ7 1210 aa8.49□□□□□ -1.05
PROM1-220ENST00000540805 CHIC1Q5VXU3 224 aa8.46□□□□□ -1.06
PROM1-220ENST00000540805 EIF4G1Q04637 1599 aaKnown RBP8.45□□□□□ -1.06
PROM1-220ENST00000540805 BAZ1AQ9NRL2 1556 aaPredicted RBP8.45□□□□□ -1.06
PROM1-220ENST00000540805 SMARCA4P51532 1647 aa8.44□□□□□ -1.06
PROM1-220ENST00000540805 CC2D2AQ9P2K1 1620 aa8.41□□□□□ -1.06
PROM1-220ENST00000540805 PEG3Q9GZU2 1588 aa8.39□□□□□ -1.07
PROM1-220ENST00000540805 TOP2AP11388 1531 aaKnown RBP8.35□□□□□ -1.07
PROM1-220ENST00000540805 SMARCA2P51531 1590 aa8.33□□□□□ -1.08
PROM1-220ENST00000540805 CUX2O14529 1486 aa8.31□□□□□ -1.08
PROM1-220ENST00000540805 PABPN1Q86U42 306 aaKnown RBP eCLIP8.28□□□□□ -1.08
PROM1-220ENST00000540805 CCDC88BA6NC98 1476 aa8.28□□□□□ -1.08
PROM1-220ENST00000540805 TRIM26Q12899 539 aaPredicted RBP8.26□□□□□ -1.09
PROM1-220ENST00000540805 ATAD2BQ9ULI0 1458 aa8.23□□□□□ -1.09
PROM1-220ENST00000540805 LOC105371045A0A1W2PR82 267 aa8.22□□□□□ -1.09
PROM1-220ENST00000540805 ZEB1P37275 1124 aaPredicted RBP8.22□□□□□ -1.09
PROM1-220ENST00000540805 NEUROD1Q13562 356 aa8.19□□□□□ -1.1
PROM1-220ENST00000540805 ABCC8Q09428 1581 aa8.17□□□□□ -1.1
PROM1-220ENST00000540805 FAM9AQ8IZU1 332 aaPredicted RBP8.16□□□□□ -1.1
PROM1-220ENST00000540805 GTF3C3Q9Y5Q9 886 aa8.16□□□□□ -1.1
PROM1-220ENST00000540805 HMGXB3Q12766 1538 aa8.15□□□□□ -1.11
PROM1-220ENST00000540805 NCAPD3P42695 1498 aa8.13□□□□□ -1.11
PROM1-220ENST00000540805 MYT1Q01538 1121 aa8.13□□□□□ -1.11
PROM1-220ENST00000540805 RANGAP1P46060 587 aaPredicted RBP8.12□□□□□ -1.11
PROM1-220ENST00000540805 TTBK1Q5TCY1 1321 aaPredicted RBP8.12□□□□□ -1.11
PROM1-220ENST00000540805 BAZ1BQ9UIG0 1483 aaKnown RBP8.12□□□□□ -1.11
PROM1-220ENST00000540805 SYNJ1O43426 1573 aa8.09□□□□□ -1.11
PROM1-220ENST00000540805 ACIN1Q9UKV3 1341 aaKnown RBP8.08□□□□□ -1.12
PROM1-220ENST00000540805 TRIM41Q8WV44 630 aa8.07□□□□□ -1.12
PROM1-220ENST00000540805 PRDM2Q13029 1718 aa8.06□□□□□ -1.12
PROM1-220ENST00000540805 BIVM-ERCC5R4GMW8 1640 aa8.04□□□□□ -1.12
PROM1-220ENST00000540805 BCL11AQ9H165 835 aa8.04□□□□□ -1.12
PROM1-220ENST00000540805 RUSC2Q8N2Y8 1516 aa8.04□□□□□ -1.12
PROM1-220ENST00000540805 THOC2Q8NI27 1593 aaKnown RBP8.04□□□□□ -1.12
PROM1-220ENST00000540805 SOGA1O94964 1423 aa8.02□□□□□ -1.13
PROM1-220ENST00000540805 TOP2BQ02880 1626 aa8.02□□□□□ -1.13
PROM1-220ENST00000540805 CFTRP13569 1480 aa8□□□□□ -1.13
PROM1-220ENST00000540805 PRKCSHP14314 528 aaPredicted RBP8□□□□□ -1.13
PROM1-220ENST00000540805 WRNQ14191 1432 aaPredicted RBP eCLIP7.99□□□□□ -1.13
PROM1-220ENST00000540805 APLP2Q06481 763 aa7.98□□□□□ -1.13
PROM1-220ENST00000540805 YTHDC1Q96MU7 727 aaKnown RBP7.97□□□□□ -1.13
PROM1-220ENST00000540805 ATP1B4Q9UN42 357 aaPredicted RBP7.97□□□□□ -1.13
PROM1-220ENST00000540805 CUX1P39880 1505 aa7.97□□□□□ -1.13
PROM1-220ENST00000540805 CENPBP07199 599 aaPredicted RBP7.94□□□□□ -1.14
PROM1-220ENST00000540805 KIF21BO75037 1637 aa7.93□□□□□ -1.14
PROM1-220ENST00000540805 EEA1Q15075 1411 aa7.91□□□□□ -1.14
PROM1-220ENST00000540805 CCER1Q8TC90 406 aaPredicted RBP7.89□□□□□ -1.15
PROM1-220ENST00000540805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.88□□□□□ -1.15
PROM1-220ENST00000540805 DIEXFQ68CQ4 756 aaKnown RBP7.88□□□□□ -1.15
PROM1-220ENST00000540805 CADPSQ9ULU8 1353 aa7.87□□□□□ -1.15
PROM1-220ENST00000540805 TNIKQ9UKE5 1360 aa7.86□□□□□ -1.15
PROM1-220ENST00000540805 PRXQ9BXM0 1461 aa7.85□□□□□ -1.15
PROM1-220ENST00000540805 ERCC6Q03468 1493 aa7.85□□□□□ -1.15
PROM1-220ENST00000540805 RAPGEF2Q9Y4G8 1499 aa7.85□□□□□ -1.15
PROM1-220ENST00000540805 NESP48681 1621 aa7.85□□□□□ -1.15
PROM1-220ENST00000540805 CEP162Q5TB80 1403 aa7.84□□□□□ -1.15
PROM1-220ENST00000540805 CSRNP3Q8WYN3 585 aa7.84□□□□□ -1.15
PROM1-220ENST00000540805 WDR97A6NE52 1622 aa7.84□□□□□ -1.15
PROM1-220ENST00000540805 GOLGA3Q08378 1498 aa7.83□□□□□ -1.16
PROM1-220ENST00000540805 LAMC3Q9Y6N6 1575 aa7.83□□□□□ -1.16
PROM1-220ENST00000540805 ERICH3Q5RHP9 1530 aa7.82□□□□□ -1.16
PROM1-220ENST00000540805 CEP164Q9UPV0 1460 aa7.82□□□□□ -1.16
PROM1-220ENST00000540805 KIF21AQ7Z4S6 1674 aa7.82□□□□□ -1.16
PROM1-220ENST00000540805 FANCD2Q9BXW9 1451 aa7.81□□□□□ -1.16
PROM1-220ENST00000540805 UBTFP17480 764 aaKnown RBP7.81□□□□□ -1.16
PROM1-220ENST00000540805 DNMBPQ6XZF7 1577 aa7.8□□□□□ -1.16
PROM1-220ENST00000540805 FGD5Q6ZNL6 1462 aa7.79□□□□□ -1.16
PROM1-220ENST00000540805 WDR62O43379 1518 aa7.79□□□□□ -1.16
PROM1-220ENST00000540805 URB2Q14146 1524 aaKnown RBP7.78□□□□□ -1.16
PROM1-220ENST00000540805 TOPBP1Q92547 1522 aa7.77□□□□□ -1.17
PROM1-220ENST00000540805 POLA1P09884 1462 aaPredicted RBP7.76□□□□□ -1.17
PROM1-220ENST00000540805 ZNF316A6NFI3 1004 aaPredicted RBP7.75□□□□□ -1.17
PROM1-220ENST00000540805 ANP32EQ9BTT0 268 aa7.75□□□□□ -1.17
PROM1-220ENST00000540805 ABCA10Q8WWZ4 1543 aa7.75□□□□□ -1.17
PROM1-220ENST00000540805 RIMBP3CA6NJZ7 1639 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms