Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL20A1Q9P218 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
COL20A1Q9P218 USP39-204ENST00000409766 2033 ntTSL 2 BASIC22.26■■□□□ 1.15
COL20A1Q9P218 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL20A1Q9P218 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL20A1Q9P218 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
COL20A1Q9P218 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
COL20A1Q9P218 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
COL20A1Q9P218 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 RCN1P1-201ENST00000400413 996 ntBASIC22.25■■□□□ 1.15
COL20A1Q9P218 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 FSCN1P1-201ENST00000568912 1481 ntBASIC22.25■■□□□ 1.15
COL20A1Q9P218 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL20A1Q9P218 AC009237.14-201ENST00000609975 1594 ntBASIC22.25■■□□□ 1.15
COL20A1Q9P218 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC22.25■■□□□ 1.15
COL20A1Q9P218 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 AC010947.1-201ENST00000623454 693 ntBASIC22.24■■□□□ 1.15
COL20A1Q9P218 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL20A1Q9P218 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC22.24■■□□□ 1.15
COL20A1Q9P218 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL20A1Q9P218 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL20A1Q9P218 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL20A1Q9P218 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL20A1Q9P218 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL20A1Q9P218 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 PPOX-219ENST00000544598 813 ntTSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 AC131212.4-201ENST00000623606 975 ntBASIC22.23■■□□□ 1.15
COL20A1Q9P218 AC112907.3-201ENST00000577781 2400 ntBASIC22.23■■□□□ 1.15
COL20A1Q9P218 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 LINC01465-201ENST00000408887 1940 ntBASIC22.23■■□□□ 1.15
COL20A1Q9P218 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC22.23■■□□□ 1.15
COL20A1Q9P218 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL20A1Q9P218 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC22.22■■□□□ 1.15
COL20A1Q9P218 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC22.22■■□□□ 1.15
COL20A1Q9P218 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 RCC2P6-201ENST00000526625 1557 ntBASIC22.22■■□□□ 1.15
COL20A1Q9P218 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.22■■□□□ 1.15
COL20A1Q9P218 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 AC145285.6-201ENST00000604632 637 ntBASIC22.22■■□□□ 1.15
COL20A1Q9P218 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC22.22■■□□□ 1.15
COL20A1Q9P218 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL20A1Q9P218 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC22.22■■□□□ 1.15
COL20A1Q9P218 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC22.22■■□□□ 1.15
COL20A1Q9P218 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms