Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 LINC01568-207ENST00000641790 1380 ntBASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 AL390955.1-201ENST00000428694 934 ntBASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TM9SF3Q9HD45 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 AC005521.1-201ENST00000393351 872 ntBASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 FITM1-202ENST00000559294 800 ntBASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 NAPSB-206ENST00000562112 1266 ntBASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TM9SF3Q9HD45 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 CYP2D8P-201ENST00000433633 1490 ntBASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 KRT18P35-201ENST00000510488 1269 ntBASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TM9SF3Q9HD45 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 GABARAPL3-202ENST00000624044 1851 ntBASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 AL049597.2-201ENST00000565575 961 ntBASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 AP006587.1-201ENST00000534129 1502 ntBASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.6■□□□□ 0.73
TM9SF3Q9HD45 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms