Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 DUX4L9-201ENST00000449051 1259 ntBASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 AC011484.1-201ENST00000377652 1995 ntBASIC15.66■□□□□ 0.1
CLRN3Q8NCR9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 CD276-203ENST00000537340 2439 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.65■□□□□ 0.1
CLRN3Q8NCR9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
CLRN3Q8NCR9 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
CLRN3Q8NCR9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 AC074183.2-201ENST00000623112 922 ntBASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
CLRN3Q8NCR9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
CLRN3Q8NCR9 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms