Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A2P12110 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL6A2P12110 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A2P12110 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.7
COL6A2P12110 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A2P12110 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A2P12110 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A2P12110 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A2P12110 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A2P12110 LSM12P1-201ENST00000411836 588 ntBASIC19.39■□□□□ 0.69
COL6A2P12110 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A2P12110 AC005181.1-201ENST00000604782 1256 ntBASIC19.39■□□□□ 0.69
COL6A2P12110 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
COL6A2P12110 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A2P12110 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.39■□□□□ 0.69
COL6A2P12110 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
COL6A2P12110 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COL6A2P12110 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A2P12110 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
COL6A2P12110 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A2P12110 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A2P12110 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A2P12110 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A2P12110 GPX1P1-201ENST00000388829 606 ntBASIC19.38■□□□□ 0.69
COL6A2P12110 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A2P12110 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.38■□□□□ 0.69
COL6A2P12110 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A2P12110 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A2P12110 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
COL6A2P12110 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A2P12110 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL6A2P12110 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
COL6A2P12110 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A2P12110 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A2P12110 AC004408.2-201ENST00000623613 2777 ntBASIC19.38■□□□□ 0.69
COL6A2P12110 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.37■□□□□ 0.69
COL6A2P12110 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL6A2P12110 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A2P12110 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.37■□□□□ 0.69
COL6A2P12110 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A2P12110 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
COL6A2P12110 RARRES2P6-201ENST00000567333 442 ntBASIC19.37■□□□□ 0.69
COL6A2P12110 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.37■□□□□ 0.69
COL6A2P12110 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A2P12110 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
COL6A2P12110 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
COL6A2P12110 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A2P12110 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A2P12110 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A2P12110 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A2P12110 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A2P12110 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A2P12110 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A2P12110 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
COL6A2P12110 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
COL6A2P12110 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A2P12110 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A2P12110 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A2P12110 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A2P12110 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A2P12110 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A2P12110 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
COL6A2P12110 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A2P12110 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A2P12110 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A2P12110 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A2P12110 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A2P12110 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A2P12110 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms