Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SIX3O95343 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SIX3O95343 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.18■□□□□ 0.66
SIX3O95343 AC083906.2-201ENST00000511578 360 ntBASIC19.18■□□□□ 0.66
SIX3O95343 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SIX3O95343 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX3O95343 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SIX3O95343 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SIX3O95343 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 AC116351.2-201ENST00000606540 1585 ntBASIC19.18■□□□□ 0.66
SIX3O95343 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.18■□□□□ 0.66
SIX3O95343 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.17■□□□□ 0.66
SIX3O95343 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX3O95343 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.17■□□□□ 0.66
SIX3O95343 DUSP5P2-201ENST00000426873 1033 ntBASIC19.17■□□□□ 0.66
SIX3O95343 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX3O95343 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX3O95343 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SIX3O95343 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX3O95343 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX3O95343 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SIX3O95343 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.17■□□□□ 0.66
SIX3O95343 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX3O95343 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.17■□□□□ 0.66
SIX3O95343 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX3O95343 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX3O95343 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SIX3O95343 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SIX3O95343 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX3O95343 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SIX3O95343 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX3O95343 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX3O95343 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
SIX3O95343 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.16■□□□□ 0.66
SIX3O95343 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SIX3O95343 AC006970.2-201ENST00000450065 779 ntBASIC19.16■□□□□ 0.66
SIX3O95343 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX3O95343 AL121832.2-201ENST00000610979 668 ntBASIC19.16■□□□□ 0.66
SIX3O95343 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.16■□□□□ 0.66
SIX3O95343 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX3O95343 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.16■□□□□ 0.66
SIX3O95343 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.16■□□□□ 0.66
SIX3O95343 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
SIX3O95343 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SIX3O95343 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SIX3O95343 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 TNXA-203ENST00000507684 2038 ntBASIC19.15■□□□□ 0.66
SIX3O95343 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 AC004408.2-201ENST00000623613 2777 ntBASIC19.15■□□□□ 0.66
SIX3O95343 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.15■□□□□ 0.66
SIX3O95343 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX3O95343 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX3O95343 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.15■□□□□ 0.66
SIX3O95343 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SIX3O95343 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.15■□□□□ 0.66
SIX3O95343 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
SIX3O95343 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SIX3O95343 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.15■□□□□ 0.66
SIX3O95343 AC120498.9-201ENST00000339021 3867 ntBASIC19.15■□□□□ 0.66
SIX3O95343 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SIX3O95343 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SIX3O95343 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.14■□□□□ 0.65
SIX3O95343 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.14■□□□□ 0.65
SIX3O95343 GUSBP6-202ENST00000438529 1198 ntBASIC19.14■□□□□ 0.65
SIX3O95343 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms